Doc bug fix

git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1121 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: 48bb0bb605dfdb9c20bcf5d8de049aef6caf15a5

3 files changed, 21 insertions, 17 deletions

diff --git a/src/Persistent_cohomology/example/periodic_alpha_complex_3d_persistence.cpp b/src/Persistent_cohomology/example/periodic_alpha_complex_3d_persistence.cpp
index e9425066..42e6f0c6 100644
--- a/src/Persistent_cohomology/example/periodic_alpha_complex_3d_persistence.cpp
+++ b/src/Persistent_cohomology/example/periodic_alpha_complex_3d_persistence.cpp
@@ -45,14 +45,14 @@ using K = CGAL::Exact_predicates_inexact_constructions_kernel;
 using PK = CGAL::Periodic_3_Delaunay_triangulation_traits_3<K>;
 // Vertex type
 using DsVb = CGAL::Periodic_3_triangulation_ds_vertex_base_3<>;
-using Vb = CGAL::Triangulation_vertex_base_3<PK,DsVb>;
-using AsVb = CGAL::Alpha_shape_vertex_base_3<PK,Vb>;
+using Vb = CGAL::Triangulation_vertex_base_3<PK, DsVb>;
+using AsVb = CGAL::Alpha_shape_vertex_base_3<PK, Vb>;
 // Cell type
 using DsCb = CGAL::Periodic_3_triangulation_ds_cell_base_3<>;
-using Cb = CGAL::Triangulation_cell_base_3<PK,DsCb>;
-using AsCb = CGAL::Alpha_shape_cell_base_3<PK,Cb>;
-using Tds = CGAL::Triangulation_data_structure_3<AsVb,AsCb>;
-using P3DT3 = CGAL::Periodic_3_Delaunay_triangulation_3<PK,Tds>;
+using Cb = CGAL::Triangulation_cell_base_3<PK, DsCb>;
+using AsCb = CGAL::Alpha_shape_cell_base_3<PK, Cb>;
+using Tds = CGAL::Triangulation_data_structure_3<AsVb, AsCb>;
+using P3DT3 = CGAL::Periodic_3_Delaunay_triangulation_3<PK, Tds>;
 using Alpha_shape_3 = CGAL::Alpha_shape_3<P3DT3>;
 using Point_3 = PK::Point_3;
 
@@ -162,9 +162,9 @@ int main(int argc, char * const argv[]) {
 
   // Retrieve the triangulation
   std::vector<Point_3> lp = off_reader.get_point_cloud();
-  
+
   // Define the periodic cube
-  P3DT3 pdt(PK::Iso_cuboid_3(0,0,0,1,1,1));
+  P3DT3 pdt(PK::Iso_cuboid_3(0, 0, 0, 1, 1, 1));
   // Heuristic for inserting large point sets (if pts is reasonably large)
   pdt.insert(lp.begin(), lp.end(), true);
   // As pdt won't be modified anymore switch to 1-sheeted cover if possible
diff --git a/src/common/doc/main_page.h b/src/common/doc/main_page.h
index 063e0a11..ecf3251f 100644
--- a/src/common/doc/main_page.h
+++ b/src/common/doc/main_page.h
@@ -189,8 +189,6 @@
  * Library</a> (CGAL \cite cgal:eb-15b) and will not be built if CGAL is not installed:
  * \li <a href="_persistent_cohomology_2alpha_complex_3d_persistence_8cpp-example.html">
  * Persistent_cohomology/alpha_complex_3d_persistence.cpp</a>
- * \li <a href="_persistent_cohomology_2alpha_complex_persistence_8cpp-example.html">
- * Persistent_cohomology/alpha_complex_persistence.cpp</a>
  * \li <a href="_simplex_tree_2simplex_tree_from_alpha_shapes_3_8cpp-example.html">
  * Simplex_tree/simplex_tree_from_alpha_shapes_3.cpp</a>
  * \li <a href="_alpha_complex_2_alpha_complex_from_off_8cpp-example.html">
@@ -207,8 +205,10 @@
  * Alpha_complex/Alpha_complex_from_off.cpp</a>
  * \li <a href="_alpha_complex_2_alpha_complex_from_points_8cpp-example.html">
  * Alpha_complex/Alpha_complex_from_points.cpp</a>
- * \li <a href="common_2_c_g_a_l_points_off_reader_8cpp-example.html">
- * common/CGAL_points_off_reader.cpp</a>
+ * \li <a href="_persistent_cohomology_2alpha_complex_persistence_8cpp-example.html">
+ * Persistent_cohomology/alpha_complex_persistence.cpp</a>
+ * \li <a href="_persistent_cohomology_2periodic_alpha_complex_3d_persistence_8cpp-example.html">
+ * Persistent_cohomology/periodic_alpha_complex_3d_persistence.cpp</a>
  * 
  * \subsection eigen3 Eigen3:
  * <a target="_blank" href="http://eigen.tuxfamily.org/">Eigen3</a> is a C++ template library for linear algebra:
@@ -222,6 +222,8 @@
  * Alpha_complex/Alpha_complex_from_points.cpp</a> (requires also Eigen3)
  * \li <a href="_persistent_cohomology_2alpha_complex_persistence_8cpp-example.html">
  * Persistent_cohomology/alpha_complex_persistence.cpp</a>
+ * \li <a href="_persistent_cohomology_2periodic_alpha_complex_3d_persistence_8cpp-example.html">
+ * Persistent_cohomology/periodic_alpha_complex_3d_persistence.cpp</a>
  * 
  * \subsection tbb Threading Building Blocks:
  * <a target="_blank" href="https://www.threadingbuildingblocks.org/">Intel&reg; TBB</a> lets you easily write parallel
@@ -267,6 +269,8 @@
  * Persistent_cohomology/rips_multifield_persistence.cpp</a>
  * \li <a href="_persistent_cohomology_2rips_persistence_8cpp-example.html">
  * Persistent_cohomology/rips_persistence.cpp</a>
+ * \li <a href="_persistent_cohomology_2periodic_alpha_complex_3d_persistence_8cpp-example.html">
+ * Persistent_cohomology/periodic_alpha_complex_3d_persistence.cpp</a>
  * 
  * \subsection demos Demos and examples
  * To build the demos and examples, run the following commands in a terminal:
@@ -307,6 +311,7 @@ make \endverbatim
  * @example Bitmap_cubical_complex/Bitmap_cubical_complex.cpp
  * @example Bitmap_cubical_complex/Bitmap_cubical_complex_periodic_boundary_conditions.cpp
  * @example Bitmap_cubical_complex/Random_bitmap_cubical_complex.cpp
+ * @example common/CGAL_3D_points_off_reader.cpp
  * @example common/CGAL_points_off_reader.cpp
  * @example Contraction/Garland_heckbert.cpp
  * @example Contraction/Rips_contraction.cpp
@@ -314,6 +319,7 @@ make \endverbatim
  * @example Persistent_cohomology/alpha_complex_persistence.cpp
  * @example Persistent_cohomology/parallel_rips_persistence.cpp
  * @example Persistent_cohomology/performance_rips_persistence.cpp
+ * @example Persistent_cohomology/periodic_alpha_complex_3d_persistence.cpp
  * @example Persistent_cohomology/persistence_from_file.cpp
  * @example Persistent_cohomology/persistence_from_simple_simplex_tree.cpp
  * @example Persistent_cohomology/plain_homology.cpp
diff --git a/src/common/include/gudhi/Points_3D_off_io.h b/src/common/include/gudhi/Points_3D_off_io.h
index 02e6f910..45c8455e 100644
--- a/src/common/include/gudhi/Points_3D_off_io.h
+++ b/src/common/include/gudhi/Points_3D_off_io.h
@@ -41,7 +41,6 @@ class Points_3D_off_visitor_reader {
   bool valid_;
 
  public:
-
   /** @brief Off_reader visitor init implementation. 
    * 
    * The init parameters are set from OFF file header.
@@ -140,11 +139,11 @@ class Points_3D_off_visitor_reader {
  * 
  * Asserts
  * 
- * @include common/CGAL_Points_3D_off_reader.cpp
+ * @include common/CGAL_3D_points_off_reader.cpp
  * 
  * When launching:
  * 
- * @code $> ./cgal3Doffreader ../../data/points/alphacomplexdoc.off
+ * @code $> ./cgal3Doffreader ../../data/points/tore3D_300.off
  * @endcode
  *
  * the program output is:
@@ -154,7 +153,6 @@ class Points_3D_off_visitor_reader {
 template<typename Point_3>
 class Points_3D_off_reader {
  public:
-
   /** @brief Reads the OFF file and constructs a vector of points from the points
    * that are in the OFF file.
    *
@@ -201,6 +199,6 @@ class Points_3D_off_reader {
   bool valid_;
 };
 
-} // namespace Gudhi
+}  // namespace Gudhi
 
 #endif  // POINTS_3D_OFF_IO_H_