Rename namespaces according to convention

+ Missing Boost_THREAD_LIBRARY
+ Useless typename
+ Use TBB_LIBRARIES

git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1274 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: 5c02ec481b62ef52b40d849e76e3d333e2ca4e7c

7 files changed, 19 insertions, 15 deletions

diff --git a/src/Alpha_complex/doc/Intro_alpha_complex.h b/src/Alpha_complex/doc/Intro_alpha_complex.h
index 226bb257..f3126169 100644
--- a/src/Alpha_complex/doc/Intro_alpha_complex.h
+++ b/src/Alpha_complex/doc/Intro_alpha_complex.h
@@ -26,7 +26,7 @@
 // needs namespace for Doxygen to link on classes
 namespace Gudhi {
 // needs namespace for Doxygen to link on classes
-namespace alphacomplex {
+namespace alpha_complex {
 
 /**  \defgroup alpha_complex Alpha complex
  * 
@@ -161,7 +161,9 @@ namespace alphacomplex {
  */
 /** @} */  // end defgroup alpha_complex
 
-}  // namespace alphacomplex
+}  // namespace alpha_complex
+
+namespace alphacomplex = alpha_complex;
 
 }  // namespace Gudhi
 
diff --git a/src/Alpha_complex/example/Alpha_complex_from_off.cpp b/src/Alpha_complex/example/Alpha_complex_from_off.cpp
index 963ef5ca..7836d59a 100644
--- a/src/Alpha_complex/example/Alpha_complex_from_off.cpp
+++ b/src/Alpha_complex/example/Alpha_complex_from_off.cpp
@@ -21,7 +21,7 @@ int main(int argc, char **argv) {
   // Init of an alpha complex from an OFF file
   // ----------------------------------------------------------------------------
   typedef CGAL::Epick_d< CGAL::Dynamic_dimension_tag > Kernel;
-  Gudhi::alphacomplex::Alpha_complex<Kernel> alpha_complex_from_file(off_file_name, alpha_square_max_value);
+  Gudhi::alpha_complex::Alpha_complex<Kernel> alpha_complex_from_file(off_file_name, alpha_square_max_value);
 
   std::streambuf* streambufffer;
   std::ofstream ouput_file_stream;
diff --git a/src/Alpha_complex/example/Alpha_complex_from_points.cpp b/src/Alpha_complex/example/Alpha_complex_from_points.cpp
index cd17af1e..49f77276 100644
--- a/src/Alpha_complex/example/Alpha_complex_from_points.cpp
+++ b/src/Alpha_complex/example/Alpha_complex_from_points.cpp
@@ -40,7 +40,7 @@ int main(int argc, char **argv) {
   // ----------------------------------------------------------------------------
   // Init of an alpha complex from the list of points
   // ----------------------------------------------------------------------------
-  Gudhi::alphacomplex::Alpha_complex<Kernel> alpha_complex_from_points(points, alpha_square_max_value);
+  Gudhi::alpha_complex::Alpha_complex<Kernel> alpha_complex_from_points(points, alpha_square_max_value);
 
   // ----------------------------------------------------------------------------
   // Display information about the alpha complex
diff --git a/src/Alpha_complex/example/CMakeLists.txt b/src/Alpha_complex/example/CMakeLists.txt
index 36d3cb1f..b828746c 100644
--- a/src/Alpha_complex/example/CMakeLists.txt
+++ b/src/Alpha_complex/example/CMakeLists.txt
@@ -13,12 +13,12 @@ if(CGAL_FOUND)
       include( ${EIGEN3_USE_FILE} )
 
       add_executable ( alphapoints Alpha_complex_from_points.cpp )
-      target_link_libraries(alphapoints  ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY})
+      target_link_libraries(alphapoints  ${Boost_SYSTEM_LIBRARY} ${Boost_THREAD_LIBRARY} ${CGAL_LIBRARY})
       add_executable ( alphaoffreader Alpha_complex_from_off.cpp )
-      target_link_libraries(alphaoffreader  ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY})
+      target_link_libraries(alphaoffreader  ${Boost_SYSTEM_LIBRARY} ${Boost_THREAD_LIBRARY} ${CGAL_LIBRARY})
       if (TBB_FOUND)
-        target_link_libraries(alphapoints ${TBB_RELEASE_LIBRARY})
-        target_link_libraries(alphaoffreader ${TBB_RELEASE_LIBRARY})
+        target_link_libraries(alphapoints ${TBB_LIBRARIES})
+        target_link_libraries(alphaoffreader ${TBB_LIBRARIES})
       endif()
 
       add_test(alphapoints ${CMAKE_CURRENT_BINARY_DIR}/alphapoints)
diff --git a/src/Alpha_complex/include/gudhi/Alpha_complex.h b/src/Alpha_complex/include/gudhi/Alpha_complex.h
index a1900cb9..096d2d2e 100644
--- a/src/Alpha_complex/include/gudhi/Alpha_complex.h
+++ b/src/Alpha_complex/include/gudhi/Alpha_complex.h
@@ -48,7 +48,7 @@
 
 namespace Gudhi {
 
-namespace alphacomplex {
+namespace alpha_complex {
 
 /**
  * \class Alpha_complex Alpha_complex.h gudhi/Alpha_complex.h
@@ -410,7 +410,9 @@ class Alpha_complex : public Simplex_tree<> {
   }
 };
 
-}  // namespace alphacomplex
+}  // namespace alpha_complex
+
+namespace alphacomplex = alpha_complex;
 
 }  // namespace Gudhi
 
diff --git a/src/Alpha_complex/test/Alpha_complex_unit_test.cpp b/src/Alpha_complex/test/Alpha_complex_unit_test.cpp
index 80b39924..4d7bf622 100644
--- a/src/Alpha_complex/test/Alpha_complex_unit_test.cpp
+++ b/src/Alpha_complex/test/Alpha_complex_unit_test.cpp
@@ -49,7 +49,7 @@ BOOST_AUTO_TEST_CASE(ALPHA_DOC_OFF_file) {
   std::cout << "========== OFF FILE NAME = " << off_file_name << " - alpha²=" <<
       max_alpha_square_value << "==========" << std::endl;
 
-  Gudhi::alphacomplex::Alpha_complex<Kernel_d> alpha_complex_from_file(off_file_name, max_alpha_square_value);
+  Gudhi::alpha_complex::Alpha_complex<Kernel_d> alpha_complex_from_file(off_file_name, max_alpha_square_value);
 
   const int DIMENSION = 2;
   std::cout << "alpha_complex_from_file.dimension()=" << alpha_complex_from_file.dimension() << std::endl;
@@ -77,7 +77,7 @@ BOOST_AUTO_TEST_CASE(ALPHA_DOC_OFF_file_filtered) {
       max_alpha_square_value << "==========" << std::endl;
 
   // Use of the default dynamic kernel
-  Gudhi::alphacomplex::Alpha_complex<> alpha_complex_from_file(off_file_name, max_alpha_square_value);
+  Gudhi::alpha_complex::Alpha_complex<> alpha_complex_from_file(off_file_name, max_alpha_square_value);
 
   const int DIMENSION = 2;
   std::cout << "alpha_complex_from_file.dimension()=" << alpha_complex_from_file.dimension() << std::endl;
@@ -128,7 +128,7 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_from_points) {
   // ----------------------------------------------------------------------------
   // Init of an alpha complex from the list of points
   // ----------------------------------------------------------------------------
-  Gudhi::alphacomplex::Alpha_complex<Kernel_s> alpha_complex_from_points(points);
+  Gudhi::alpha_complex::Alpha_complex<Kernel_s> alpha_complex_from_points(points);
 
   std::cout << "========== Alpha_complex_from_points ==========" << std::endl;
 
diff --git a/src/Alpha_complex/test/CMakeLists.txt b/src/Alpha_complex/test/CMakeLists.txt
index d4b34126..7aba3a16 100644
--- a/src/Alpha_complex/test/CMakeLists.txt
+++ b/src/Alpha_complex/test/CMakeLists.txt
@@ -23,9 +23,9 @@ if(CGAL_FOUND)
       include_directories (BEFORE "../../include")
 
       add_executable ( AlphaComplexUT Alpha_complex_unit_test.cpp )
-      target_link_libraries(AlphaComplexUT  ${Boost_SYSTEM_LIBRARY} ${CGAL_LIBRARY} ${Boost_UNIT_TEST_FRAMEWORK_LIBRARY})
+      target_link_libraries(AlphaComplexUT  ${Boost_SYSTEM_LIBRARY} ${Boost_THREAD_LIBRARY} ${CGAL_LIBRARY} ${Boost_UNIT_TEST_FRAMEWORK_LIBRARY})
       if (TBB_FOUND)
-        target_link_libraries(AlphaComplexUT ${TBB_RELEASE_LIBRARY})
+        target_link_libraries(AlphaComplexUT ${TBB_LIBRARIES})
       endif()
 
       # Do not forget to copy test files in current binary dir