diff options
author | Vincent Rouvreau <vincent.rouvreau@inria.fr> | 2022-04-06 09:40:02 +0200 |
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committer | Vincent Rouvreau <vincent.rouvreau@inria.fr> | 2022-04-06 09:40:02 +0200 |
commit | e957f640d4653fc13458a232435761c5a184b05c (patch) | |
tree | 21b5d346233b5027c5143c756adb1261076ca434 /src/Alpha_complex | |
parent | 87da488d24c70cbd470ad1c2dae762af68cd227e (diff) | |
parent | b066b4376abf66ddc76e61a6a815a409b05fe59b (diff) |
Merge remote-tracking branch 'upstream/master' into persistence_graphical_tools_improvements
Diffstat (limited to 'src/Alpha_complex')
-rw-r--r-- | src/Alpha_complex/doc/Intro_alpha_complex.h | 2 | ||||
-rw-r--r-- | src/Alpha_complex/include/gudhi/Alpha_complex.h | 18 | ||||
-rw-r--r-- | src/Alpha_complex/include/gudhi/Alpha_complex_3d.h | 7 | ||||
-rw-r--r-- | src/Alpha_complex/test/Alpha_complex_unit_test.cpp | 15 |
4 files changed, 36 insertions, 6 deletions
diff --git a/src/Alpha_complex/doc/Intro_alpha_complex.h b/src/Alpha_complex/doc/Intro_alpha_complex.h index f417ebb2..5ab23720 100644 --- a/src/Alpha_complex/doc/Intro_alpha_complex.h +++ b/src/Alpha_complex/doc/Intro_alpha_complex.h @@ -152,6 +152,8 @@ Table of Contents * not quite define a proper filtration (i.e. non-decreasing with respect to inclusion). * We fix that up by calling `SimplicialComplexForAlpha::make_filtration_non_decreasing()`. * + * \note This is not the case in `exact` version, this is the reason why it is not called in this case. + * * \subsubsection pruneabove Prune above given filtration value * * The simplex tree is pruned from the given maximum \f$ \alpha^2 \f$ value (cf. diff --git a/src/Alpha_complex/include/gudhi/Alpha_complex.h b/src/Alpha_complex/include/gudhi/Alpha_complex.h index b315fa99..028ec9bb 100644 --- a/src/Alpha_complex/include/gudhi/Alpha_complex.h +++ b/src/Alpha_complex/include/gudhi/Alpha_complex.h @@ -20,6 +20,7 @@ #include <stdlib.h> #include <math.h> // isnan, fmax #include <memory> // for std::unique_ptr +#include <cstddef> // for std::size_t #include <CGAL/Delaunay_triangulation.h> #include <CGAL/Regular_triangulation.h> // aka. Weighted Delaunay triangulation @@ -213,6 +214,15 @@ class Alpha_complex { Alpha_complex (Alpha_complex&& other) = delete; Alpha_complex& operator= (Alpha_complex&& other) = delete; + /** \brief Returns the number of finite vertices in the triangulation. + */ + std::size_t num_vertices() const { + if (triangulation_ == nullptr) + return 0; + else + return triangulation_->number_of_vertices(); + } + /** \brief get_point returns the point corresponding to the vertex given as parameter. * * @param[in] vertex Vertex handle of the point to retrieve. @@ -373,7 +383,7 @@ class Alpha_complex { // -------------------------------------------------------------------------------------------- // Simplex_tree construction from loop on triangulation finite full cells list - if (triangulation_->number_of_vertices() > 0) { + if (num_vertices() > 0) { for (auto cit = triangulation_->finite_full_cells_begin(); cit != triangulation_->finite_full_cells_end(); ++cit) { @@ -435,8 +445,10 @@ class Alpha_complex { // -------------------------------------------------------------------------------------------- // -------------------------------------------------------------------------------------------- - // As Alpha value is an approximation, we have to make filtration non decreasing while increasing the dimension - complex.make_filtration_non_decreasing(); + if (!exact) + // As Alpha value is an approximation, we have to make filtration non decreasing while increasing the dimension + // Only in not exact version, cf. https://github.com/GUDHI/gudhi-devel/issues/57 + complex.make_filtration_non_decreasing(); // Remove all simplices that have a filtration value greater than max_alpha_square complex.prune_above_filtration(max_alpha_square); // -------------------------------------------------------------------------------------------- diff --git a/src/Alpha_complex/include/gudhi/Alpha_complex_3d.h b/src/Alpha_complex/include/gudhi/Alpha_complex_3d.h index 4e5fc933..df5c630e 100644 --- a/src/Alpha_complex/include/gudhi/Alpha_complex_3d.h +++ b/src/Alpha_complex/include/gudhi/Alpha_complex_3d.h @@ -12,7 +12,6 @@ #ifndef ALPHA_COMPLEX_3D_H_ #define ALPHA_COMPLEX_3D_H_ -#include <boost/version.hpp> #include <boost/variant.hpp> #include <boost/range/size.hpp> #include <boost/range/combine.hpp> @@ -554,8 +553,10 @@ Weighted_alpha_complex_3d::Weighted_point_3 wp0(Weighted_alpha_complex_3d::Bare_ std::clog << "cells \t\t" << count_cells << std::endl; #endif // DEBUG_TRACES // -------------------------------------------------------------------------------------------- - // As Alpha value is an approximation, we have to make filtration non decreasing while increasing the dimension - complex.make_filtration_non_decreasing(); + if (Complexity == complexity::FAST) + // As Alpha value is an approximation, we have to make filtration non decreasing while increasing the dimension + // Only in FAST version, cf. https://github.com/GUDHI/gudhi-devel/issues/57 + complex.make_filtration_non_decreasing(); // Remove all simplices that have a filtration value greater than max_alpha_square complex.prune_above_filtration(max_alpha_square); // -------------------------------------------------------------------------------------------- diff --git a/src/Alpha_complex/test/Alpha_complex_unit_test.cpp b/src/Alpha_complex/test/Alpha_complex_unit_test.cpp index 4b37e4bd..f74ad217 100644 --- a/src/Alpha_complex/test/Alpha_complex_unit_test.cpp +++ b/src/Alpha_complex/test/Alpha_complex_unit_test.cpp @@ -56,6 +56,9 @@ BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_from_OFF_file, TestedKernel, list_of Gudhi::Simplex_tree<> simplex_tree_60; BOOST_CHECK(alpha_complex_from_file.create_complex(simplex_tree_60, max_alpha_square_value)); + std::clog << "alpha_complex_from_file.num_vertices()=" << alpha_complex_from_file.num_vertices() << std::endl; + BOOST_CHECK(alpha_complex_from_file.num_vertices() == 7); + std::clog << "simplex_tree_60.dimension()=" << simplex_tree_60.dimension() << std::endl; BOOST_CHECK(simplex_tree_60.dimension() == 2); @@ -72,6 +75,9 @@ BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_from_OFF_file, TestedKernel, list_of Gudhi::Simplex_tree<> simplex_tree_59; BOOST_CHECK(alpha_complex_from_file.create_complex(simplex_tree_59, max_alpha_square_value)); + std::clog << "alpha_complex_from_file.num_vertices()=" << alpha_complex_from_file.num_vertices() << std::endl; + BOOST_CHECK(alpha_complex_from_file.num_vertices() == 7); + std::clog << "simplex_tree_59.dimension()=" << simplex_tree_59.dimension() << std::endl; BOOST_CHECK(simplex_tree_59.dimension() == 2); @@ -120,6 +126,9 @@ BOOST_AUTO_TEST_CASE(Alpha_complex_from_points) { Gudhi::Simplex_tree<> simplex_tree; BOOST_CHECK(alpha_complex_from_points.create_complex(simplex_tree)); + std::clog << "alpha_complex_from_points.num_vertices()=" << alpha_complex_from_points.num_vertices() << std::endl; + BOOST_CHECK(alpha_complex_from_points.num_vertices() == points.size()); + // Another way to check num_simplices std::clog << "Iterator on alpha complex simplices in the filtration order, with [filtration value]:" << std::endl; int num_simplices = 0; @@ -240,6 +249,9 @@ BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_from_empty_points, TestedKernel, lis // ---------------------------------------------------------------------------- Gudhi::alpha_complex::Alpha_complex<TestedKernel> alpha_complex_from_points(points); + std::clog << "alpha_complex_from_points.num_vertices()=" << alpha_complex_from_points.num_vertices() << std::endl; + BOOST_CHECK(alpha_complex_from_points.num_vertices() == points.size()); + // Test to the limit BOOST_CHECK_THROW (alpha_complex_from_points.get_point(0), std::out_of_range); @@ -291,6 +303,9 @@ BOOST_AUTO_TEST_CASE_TEMPLATE(Alpha_complex_with_duplicated_points, TestedKernel std::clog << "create_complex" << std::endl; BOOST_CHECK(alpha_complex_from_points.create_complex(simplex_tree)); + std::clog << "alpha_complex_from_points.num_vertices()=" << alpha_complex_from_points.num_vertices() << std::endl; + BOOST_CHECK(alpha_complex_from_points.num_vertices() < points.size()); + std::clog << "simplex_tree.num_vertices()=" << simplex_tree.num_vertices() << std::endl; BOOST_CHECK(simplex_tree.num_vertices() < points.size()); |