integrated kernel code in pers_representation branch

git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/kernels@3249 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: 58e77263a0da3674e4699cef832b6d357dcf12e2

3 files changed, 29 insertions, 19 deletions

diff --git a/src/Bitmap_cubical_complex/doc/Gudhi_Cubical_Complex_doc.h b/src/Bitmap_cubical_complex/doc/Gudhi_Cubical_Complex_doc.h
index ee84e201..a5d7b60f 100644
--- a/src/Bitmap_cubical_complex/doc/Gudhi_Cubical_Complex_doc.h
+++ b/src/Bitmap_cubical_complex/doc/Gudhi_Cubical_Complex_doc.h
@@ -105,7 +105,6 @@ namespace cubical_complex {
  * \section BitmapExamples Examples
  * End user programs are available in example/Bitmap_cubical_complex and utilities/Bitmap_cubical_complex folders.
  * 
- * \copyright GNU General Public License v3.
  */
 /** @} */  // end defgroup cubical_complex
 
diff --git a/src/Bitmap_cubical_complex/utilities/README b/src/Bitmap_cubical_complex/utilities/README
deleted file mode 100644
index ddff7034..00000000
--- a/src/Bitmap_cubical_complex/utilities/README
+++ /dev/null
@@ -1,18 +0,0 @@
-# Bitmap_cubical_complex #

-

-## `cubical_complex_persistence` ##

-This program computes persistent homology, by using the Bitmap_cubical_complex class, of cubical complexes provided in text files in Perseus style. See [here](http://gudhi.gforge.inria.fr/doc/latest/fileformats.html#FileFormatsPerseus) for a description of the file format.

-

-Example:

-

-* Create a Cubical Complex from the Perseus style file `CubicalTwoSphere.txt`, computes Persistence cohomology from it and writes the results in a persistence file `CubicalTwoSphere.txt_persistence`:

-`cubical_complex_persistence data/bitmap/CubicalTwoSphere.txt`

-

-## `periodic_cubical_complex_persistence` ##

-

-Same as above, but with periodic boundary conditions.

-

-Example:

-

-* Create a Periodical Cubical Complex from the Perseus style file `3d_torus.txt`, computes Persistence cohomology from it and writes the results in a persistence file `3d_torus.txt_persistence`:

-`periodic_cubical_complex_persistence data/bitmap/3d_torus.txt`

diff --git a/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md b/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md
new file mode 100644
index 00000000..6e1b2578
--- /dev/null
+++ b/src/Bitmap_cubical_complex/utilities/cubicalcomplex.md
@@ -0,0 +1,29 @@
+

+

+# Cubical complex#

+

+## cubical_complex_persistence ##

+This program computes persistent homology, by using the Bitmap_cubical_complex class, of cubical complexes provided in text files in Perseus style.

+See [here](/doc/latest/fileformats.html#FileFormatsPerseus) for a description of the file format.

+

+**Example**

+

+```

+   cubical_complex_persistence data/bitmap/CubicalTwoSphere.txt

+```

+

+* Creates a Cubical Complex from the Perseus style file `CubicalTwoSphere.txt`,

+computes Persistence cohomology from it and writes the results in a persistence file `CubicalTwoSphere.txt_persistence`.

+

+## periodic_cubical_complex_persistence ##

+

+Same as above, but with periodic boundary conditions.

+

+**Example**

+

+```

+   periodic_cubical_complex_persistence data/bitmap/3d_torus.txt

+```

+

+* Creates a Periodical Cubical Complex from the Perseus style file `3d_torus.txt`,

+computes Persistence cohomology from it and writes the results in a persistence file `3d_torus.txt_persistence`.