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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@1358 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: 0e9d6a12249ef1890bfd3db26e15ff01b716eca2

1 files changed, 118 insertions, 0 deletions

diff --git a/src/Gudhi_stat/example/persistence_intervals.cpp b/src/Gudhi_stat/example/persistence_intervals.cpp
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+/*    This file is part of the Gudhi Library. The Gudhi library
+ *    (Geometric Understanding in Higher Dimensions) is a generic C++
+ *    library for computational topology.
+ *
+ *    Author(s):       Pawel Dlotko
+ *
+ *    Copyright (C) 2015  INRIA Sophia-Saclay (France)
+ *
+ *    This program is free software: you can redistribute it and/or modify
+ *    it under the terms of the GNU General Public License as published by
+ *    the Free Software Foundation, either version 3 of the License, or
+ *    (at your option) any later version.
+ *
+ *    This program is distributed in the hope that it will be useful,
+ *    but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *    GNU General Public License for more details.
+ *
+ *    You should have received a copy of the GNU General Public License
+ *    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
+
+
+#include <gudhi/reader_utils.h>
+#include <gudhi/abstract_classes/Abs_Topological_data.h>
+#include "gudhi/concretizations/persistence_intervals.h"
+
+#include <iostream>
+
+
+
+using namespace Gudhi;
+using namespace Gudhi::Gudhi_stat;
+
+
+double epsilon = 0.0000005;
+
+using namespace std;
+
+	
+int main( int argc , char** argv )
+{
+	if ( argc != 2 )
+	{
+		cout << "To run this program, please provide the name of a file with persistence diagram \n";
+		return 1;
+	}
+	
+	Persistence_intervals p( argv[1] );
+	std::pair<double,double> min_max_ = p.min_max();
+	
+	cout << "Birth-death range : " <<  min_max_.first << " " << min_max_.second << endl;
+	
+	
+	std::vector<double> dominant_ten_intervals_length = p.length_of_dominant_intervals(10);
+	cout << "Lendth of ten dominant intervals : " << endl;	
+	for ( size_t i = 0 ; i != dominant_ten_intervals_length.size() ; ++i )
+	{
+		cout << dominant_ten_intervals_length[i] << endl;
+	}
+	std::vector< std::pair<double,double> > ten_dominant_intervals = p.dominant_intervals( 10 );
+	
+	cout << "Here are the dominant intervals : " << endl;
+	for ( size_t i = 0 ; i != ten_dominant_intervals.size() ; ++i )
+	{
+		cout << "( " << ten_dominant_intervals[i].first<< "," << ten_dominant_intervals[i].second << endl;
+	}
+	
+	std::vector< size_t > histogram = p.histograms_of_lengths( 10  );
+	cout << "Here is the histogram of barcode's length : " << endl;
+	for ( size_t i = 0 ; i != histogram.size() ; ++i )
+	{
+		cout << histogram[i]  << " ";
+	}		
+	cout << endl;
+
+	
+	std::vector< size_t > cumulative_histogram = p.cumulative_histograms_of_lengths( 10  );
+	cout<< "Cumuative histogram : " << endl;	
+	for ( size_t i = 0 ; i != cumulative_histogram.size() ; ++i )
+	{
+		cout << cumulative_histogram[i] << " ";
+	}		
+	cout << endl;
+
+	std::vector< double  > char_funct_diag = p.characteristic_function_of_diagram( min_max_.first , min_max_.second );	
+	cout << "Characteristic function of diagram : " << endl;
+	for ( size_t i = 0 ; i != char_funct_diag.size() ; ++i )
+	{
+		cout << char_funct_diag[i] << " ";
+	}		
+	cout << endl;
+
+	std::vector< double  > cumul_char_funct_diag = p.cumulative_characteristic_function_of_diagram( min_max_.first , min_max_.second );
+	cout << "Cumulative characteristic function of diagram : " << endl;
+	for ( size_t i = 0 ; i != cumul_char_funct_diag.size() ; ++i )
+	{		
+		cout << cumul_char_funct_diag[i] << " ";
+	}	
+	cout << endl;
+
+	cout << "Persistence Betti numbers \n";
+	std::vector< std::pair< double , size_t > > pbns = p.compute_persistent_betti_numbers();	
+	for ( size_t i = 0 ; i != pbns.size() ; ++i )
+	{
+		cout <<  pbns[i].first << " " << pbns[i].second << endl;	
+	}
+	
+	return 0;
+}
+
+
+
+
+
+
+