adding examples

git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@1356 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: 1d703c8d0f03db43dd6f6b03e7ca3aff49c89756

18 files changed, 105 insertions, 303 deletions

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@@ -1,6 +0,0 @@
-# CMake generated Testfile for 
-# Source directory: /home/pawel/Dropbox/gudhi/gudhi_stat/src/Gudhi_stat/example
-# Build directory: /home/pawel/Dropbox/gudhi/gudhi_stat/src/Gudhi_stat/example
-# 
-# This file includes the relevant testing commands required for 
-# testing this directory and lists subdirectories to be tested as well.
diff --git a/src/Gudhi_stat/example/Makefile b/src/Gudhi_stat/example/Makefile
index f876c1b3..523396e5 100644
--- a/src/Gudhi_stat/example/Makefile
+++ b/src/Gudhi_stat/example/Makefile
@@ -109,6 +109,20 @@ depend:
 .PHONY : depend
 
 # Convenience name for target.
+src/Gudhi_stat/example/CMakeFiles/persistence_intervals.dir/rule:
+	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f CMakeFiles/Makefile2 src/Gudhi_stat/example/CMakeFiles/persistence_intervals.dir/rule
+.PHONY : src/Gudhi_stat/example/CMakeFiles/persistence_intervals.dir/rule
+
+# Convenience name for target.
+persistence_intervals: src/Gudhi_stat/example/CMakeFiles/persistence_intervals.dir/rule
+.PHONY : persistence_intervals
+
+# fast build rule for target.
+persistence_intervals/fast:
+	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f src/Gudhi_stat/example/CMakeFiles/persistence_intervals.dir/build.make src/Gudhi_stat/example/CMakeFiles/persistence_intervals.dir/build
+.PHONY : persistence_intervals/fast
+
+# Convenience name for target.
 src/Gudhi_stat/example/CMakeFiles/persistence_landscape.dir/rule:
 	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f CMakeFiles/Makefile2 src/Gudhi_stat/example/CMakeFiles/persistence_landscape.dir/rule
 .PHONY : src/Gudhi_stat/example/CMakeFiles/persistence_landscape.dir/rule
@@ -122,6 +136,44 @@ persistence_landscape/fast:
 	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f src/Gudhi_stat/example/CMakeFiles/persistence_landscape.dir/build.make src/Gudhi_stat/example/CMakeFiles/persistence_landscape.dir/build
 .PHONY : persistence_landscape/fast
 
+# Convenience name for target.
+src/Gudhi_stat/example/CMakeFiles/vector_representation.dir/rule:
+	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f CMakeFiles/Makefile2 src/Gudhi_stat/example/CMakeFiles/vector_representation.dir/rule
+.PHONY : src/Gudhi_stat/example/CMakeFiles/vector_representation.dir/rule
+
+# Convenience name for target.
+vector_representation: src/Gudhi_stat/example/CMakeFiles/vector_representation.dir/rule
+.PHONY : vector_representation
+
+# fast build rule for target.
+vector_representation/fast:
+	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f src/Gudhi_stat/example/CMakeFiles/vector_representation.dir/build.make src/Gudhi_stat/example/CMakeFiles/vector_representation.dir/build
+.PHONY : vector_representation/fast
+
+persistence_intervals.o: persistence_intervals.cpp.o
+.PHONY : persistence_intervals.o
+
+# target to build an object file
+persistence_intervals.cpp.o:
+	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f src/Gudhi_stat/example/CMakeFiles/persistence_intervals.dir/build.make src/Gudhi_stat/example/CMakeFiles/persistence_intervals.dir/persistence_intervals.cpp.o
+.PHONY : persistence_intervals.cpp.o
+
+persistence_intervals.i: persistence_intervals.cpp.i
+.PHONY : persistence_intervals.i
+
+# target to preprocess a source file
+persistence_intervals.cpp.i:
+	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f src/Gudhi_stat/example/CMakeFiles/persistence_intervals.dir/build.make src/Gudhi_stat/example/CMakeFiles/persistence_intervals.dir/persistence_intervals.cpp.i
+.PHONY : persistence_intervals.cpp.i
+
+persistence_intervals.s: persistence_intervals.cpp.s
+.PHONY : persistence_intervals.s
+
+# target to generate assembly for a file
+persistence_intervals.cpp.s:
+	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f src/Gudhi_stat/example/CMakeFiles/persistence_intervals.dir/build.make src/Gudhi_stat/example/CMakeFiles/persistence_intervals.dir/persistence_intervals.cpp.s
+.PHONY : persistence_intervals.cpp.s
+
 persistence_landscape.o: persistence_landscape.cpp.o
 .PHONY : persistence_landscape.o
 
@@ -146,6 +198,30 @@ persistence_landscape.cpp.s:
 	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f src/Gudhi_stat/example/CMakeFiles/persistence_landscape.dir/build.make src/Gudhi_stat/example/CMakeFiles/persistence_landscape.dir/persistence_landscape.cpp.s
 .PHONY : persistence_landscape.cpp.s
 
+vector_representation.o: vector_representation.cpp.o
+.PHONY : vector_representation.o
+
+# target to build an object file
+vector_representation.cpp.o:
+	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f src/Gudhi_stat/example/CMakeFiles/vector_representation.dir/build.make src/Gudhi_stat/example/CMakeFiles/vector_representation.dir/vector_representation.cpp.o
+.PHONY : vector_representation.cpp.o
+
+vector_representation.i: vector_representation.cpp.i
+.PHONY : vector_representation.i
+
+# target to preprocess a source file
+vector_representation.cpp.i:
+	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f src/Gudhi_stat/example/CMakeFiles/vector_representation.dir/build.make src/Gudhi_stat/example/CMakeFiles/vector_representation.dir/vector_representation.cpp.i
+.PHONY : vector_representation.cpp.i
+
+vector_representation.s: vector_representation.cpp.s
+.PHONY : vector_representation.s
+
+# target to generate assembly for a file
+vector_representation.cpp.s:
+	cd /home/pawel/Dropbox/gudhi/gudhi_stat && $(MAKE) -f src/Gudhi_stat/example/CMakeFiles/vector_representation.dir/build.make src/Gudhi_stat/example/CMakeFiles/vector_representation.dir/vector_representation.cpp.s
+.PHONY : vector_representation.cpp.s
+
 # Help Target
 help:
 	@echo "The following are some of the valid targets for this Makefile:"
@@ -153,12 +229,20 @@ help:
 	@echo "... clean"
 	@echo "... depend"
 	@echo "... edit_cache"
+	@echo "... persistence_intervals"
 	@echo "... persistence_landscape"
 	@echo "... rebuild_cache"
 	@echo "... test"
+	@echo "... vector_representation"
+	@echo "... persistence_intervals.o"
+	@echo "... persistence_intervals.i"
+	@echo "... persistence_intervals.s"
 	@echo "... persistence_landscape.o"
 	@echo "... persistence_landscape.i"
 	@echo "... persistence_landscape.s"
+	@echo "... vector_representation.o"
+	@echo "... vector_representation.i"
+	@echo "... vector_representation.s"
 .PHONY : help
 
 
diff --git a/src/Gudhi_stat/include/gudhi/concretizations/Vector_distances_in_diagram.h b/src/Gudhi_stat/include/gudhi/concretizations/Vector_distances_in_diagram.h
index 626c962b..bcabadac 100644
--- a/src/Gudhi_stat/include/gudhi/concretizations/Vector_distances_in_diagram.h
+++ b/src/Gudhi_stat/include/gudhi/concretizations/Vector_distances_in_diagram.h
@@ -375,17 +375,19 @@ void Vector_distances_in_diagram<F>::compute_average( std::vector< Abs_Topologic
 		return;
 	}
 	
-	Vector_distances_in_diagram<F>* base = (Vector_distances_in_diagram<F>*)to_average[0];
-	for ( size_t i = 1 ; i != to_average.size() ; ++i )
+	size_t maximal_length_of_vector = 0;
+	for ( size_t i = 0 ; i != to_average.size() ; ++i )
 	{
 		Vector_distances_in_diagram<F>* current = (Vector_distances_in_diagram<F>*)to_average[i];
-		if ( current->sorted_vector_of_distnaces.size() != base->sorted_vector_of_distnaces.size() )
+		if ( current->sorted_vector_of_distnaces.size() > maximal_length_of_vector )
 		{
-			throw "Not compatible sizes of Vector_distances_in_diagram in the method Vector_distances_in_diagram<F>::compute_average";
+			maximal_length_of_vector = current->sorted_vector_of_distnaces.size();
 		}
 	}
 	
-	std::vector< double > av( base->sorted_vector_of_distnaces.size() , 0 );
+	//cerr << "maximal_length_of_vector  : " << maximal_length_of_vector << endl;
+	
+	std::vector< double > av(  maximal_length_of_vector , 0 );
 	for ( size_t i = 0 ; i != to_average.size() ; ++i )
 	{
 		Vector_distances_in_diagram<F>* current = (Vector_distances_in_diagram<F>*)to_average[i];
@@ -395,12 +397,12 @@ void Vector_distances_in_diagram<F>::compute_average( std::vector< Abs_Topologic
 		}
 	}
 	
-	for ( size_t i = 0 ; i != to_average.size() ; ++i )
+	for ( size_t i = 0 ; i != maximal_length_of_vector ; ++i )
 	{
 		av[i] /= (double)to_average.size();
 	}
-	
-	(*this) = Vector_distances_in_diagram<F>( av );
+	this->sorted_vector_of_distnaces = av;
+	this->where_to_cut = av.size();
 }
 
 template <typename F>
diff --git a/src/Gudhi_stat/test/CMakeFiles/persistence_intervals_test.dir/progress.make b/src/Gudhi_stat/test/CMakeFiles/persistence_intervals_test.dir/progress.make
index a3100dd4..044b5ab3 100644
--- a/src/Gudhi_stat/test/CMakeFiles/persistence_intervals_test.dir/progress.make
+++ b/src/Gudhi_stat/test/CMakeFiles/persistence_intervals_test.dir/progress.make
@@ -1,2 +1,2 @@
-CMAKE_PROGRESS_1 = 31
+CMAKE_PROGRESS_1 = 32
 
diff --git a/src/Gudhi_stat/test/CMakeFiles/persistence_lanscapes_test.dir/progress.make b/src/Gudhi_stat/test/CMakeFiles/persistence_lanscapes_test.dir/progress.make
index 51133726..49a8b316 100644
--- a/src/Gudhi_stat/test/CMakeFiles/persistence_lanscapes_test.dir/progress.make
+++ b/src/Gudhi_stat/test/CMakeFiles/persistence_lanscapes_test.dir/progress.make
@@ -1,2 +1,2 @@
-CMAKE_PROGRESS_1 = 33
+CMAKE_PROGRESS_1 = 34
 
diff --git a/src/Gudhi_stat/test/CMakeFiles/vector_representation_test.dir/progress.make b/src/Gudhi_stat/test/CMakeFiles/vector_representation_test.dir/progress.make
index 109d64a8..049132e5 100644
--- a/src/Gudhi_stat/test/CMakeFiles/vector_representation_test.dir/progress.make
+++ b/src/Gudhi_stat/test/CMakeFiles/vector_representation_test.dir/progress.make
@@ -1,2 +1,2 @@
-CMAKE_PROGRESS_1 = 43
+CMAKE_PROGRESS_1 = 45