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author | cjamin <cjamin@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2017-09-29 15:59:03 +0000 |
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committer | cjamin <cjamin@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2017-09-29 15:59:03 +0000 |
commit | f45959484fb85299d9ac60c43de9325e5c06e730 (patch) | |
tree | 64055685e3e2d1b1bb8db82db57bd1c45d7657ea /src/cython/doc/fileformats.rst | |
parent | 0a66874247cb6ab10a2d96e22ecd5009113291d2 (diff) | |
parent | 768c70aa382a7b0b561ea842720f5963a412b88e (diff) |
Merge from trunk
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2732 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 7872aa224ee471c05e9213b81192d304254e608a
Diffstat (limited to 'src/cython/doc/fileformats.rst')
-rw-r--r-- | src/cython/doc/fileformats.rst | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/src/cython/doc/fileformats.rst b/src/cython/doc/fileformats.rst new file mode 100644 index 00000000..156ef4e4 --- /dev/null +++ b/src/cython/doc/fileformats.rst @@ -0,0 +1,33 @@ +File formats +############ + +Persistence Diagram +******************* + +Such a file, whose extension is usually ``.pers``, contains a list of +persistence intervals. + +Lines starting with ``#`` are ignored (comments). + +Other lines might contain 2, 3 or 4 values (the number of values on each line +must be the same for all lines):: + + [[field] dimension] birth death + +Here is a simple sample file:: + + # Persistence diagram example + 2 2.7 3.7 + 2 9.6 14. + # Some comments + 3 34.2 34.974 + 4 3. inf + +Other sample files can be found in the data/persistence_diagram folder. + +Such files can be generated with +:meth:`gudhi.SimplexTree.write_persistence_diagram`, read with +:meth:`gudhi.read_persistence_intervals_grouped_by_dimension`, or +:meth:`gudhi.read_persistence_intervals_in_dimension` and displayed with +:meth:`gudhi.plot_persistence_barcode` or +:meth:`gudhi.plot_persistence_diagram`. |