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authorcjamin <cjamin@636b058d-ea47-450e-bf9e-a15bfbe3eedb>2017-09-29 15:59:03 +0000
committercjamin <cjamin@636b058d-ea47-450e-bf9e-a15bfbe3eedb>2017-09-29 15:59:03 +0000
commitf45959484fb85299d9ac60c43de9325e5c06e730 (patch)
tree64055685e3e2d1b1bb8db82db57bd1c45d7657ea /src/cython/doc/fileformats.rst
parent0a66874247cb6ab10a2d96e22ecd5009113291d2 (diff)
parent768c70aa382a7b0b561ea842720f5963a412b88e (diff)
Merge from trunk
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2732 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7872aa224ee471c05e9213b81192d304254e608a
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+File formats
+############
+
+Persistence Diagram
+*******************
+
+Such a file, whose extension is usually ``.pers``, contains a list of
+persistence intervals.
+
+Lines starting with ``#`` are ignored (comments).
+
+Other lines might contain 2, 3 or 4 values (the number of values on each line
+must be the same for all lines)::
+
+ [[field] dimension] birth death
+
+Here is a simple sample file::
+
+ # Persistence diagram example
+ 2 2.7 3.7
+ 2 9.6 14.
+ # Some comments
+ 3 34.2 34.974
+ 4 3. inf
+
+Other sample files can be found in the data/persistence_diagram folder.
+
+Such files can be generated with
+:meth:`gudhi.SimplexTree.write_persistence_diagram`, read with
+:meth:`gudhi.read_persistence_intervals_grouped_by_dimension`, or
+:meth:`gudhi.read_persistence_intervals_in_dimension` and displayed with
+:meth:`gudhi.plot_persistence_barcode` or
+:meth:`gudhi.plot_persistence_diagram`.