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author | vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2017-08-09 10:44:44 +0000 |
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committer | vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2017-08-09 10:44:44 +0000 |
commit | 947d6f3b5bf90689e0d1ba6a4d566bab0730b5a9 (patch) | |
tree | 3e37ed2dc5acd8d42b6a15bf4aba8cfe9bfeaae8 /src/cython/doc/persistence_graphical_tools_user.rst | |
parent | 295d60787357806ae9aac1bfab98f3fefcd759a0 (diff) | |
parent | 1129608c2add6f15538b3e281d75119f0e1bc8b0 (diff) |
Merge last trunk modifications
persistence file reader Python interface
persistence_graphical_tools improvement (max_plots and max_barcodes, and from a persistence file)
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2604 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: db80333d4f34151be0c32024af597d90d221a97f
Diffstat (limited to 'src/cython/doc/persistence_graphical_tools_user.rst')
-rw-r--r-- | src/cython/doc/persistence_graphical_tools_user.rst | 20 |
1 files changed, 12 insertions, 8 deletions
diff --git a/src/cython/doc/persistence_graphical_tools_user.rst b/src/cython/doc/persistence_graphical_tools_user.rst index bc731f12..13198162 100644 --- a/src/cython/doc/persistence_graphical_tools_user.rst +++ b/src/cython/doc/persistence_graphical_tools_user.rst @@ -14,12 +14,14 @@ This function is useful to show the color palette values of dimension: .. testcode:: import gudhi - gudhi.show_palette_values(alpha=1.0) + plt = gudhi.show_palette_values(alpha=1.0) + plt.show() .. plot:: import gudhi - gudhi.show_palette_values(alpha=1.0) + plt = gudhi.show_palette_values(alpha=1.0) + plt.show() Show persistence as a barcode ----------------------------- @@ -32,7 +34,8 @@ This function can display the persistence result as a barcode: periodic_cc = gudhi.PeriodicCubicalComplex(perseus_file='3d_torus.txt') diag = periodic_cc.persistence() - gudhi.plot_persistence_barcode(diag) + plt = gudhi.plot_persistence_barcode(diag) + plt.show() .. plot:: @@ -40,7 +43,8 @@ This function can display the persistence result as a barcode: periodic_cc = gudhi.PeriodicCubicalComplex(perseus_file='3d_torus.txt') diag = periodic_cc.persistence() - gudhi.plot_persistence_barcode(diag) + plt = gudhi.plot_persistence_barcode(diag) + plt.show() Show persistence as a diagram ----------------------------- @@ -54,8 +58,8 @@ This function can display the persistence result as a diagram: rips_complex = gudhi.RipsComplex(off_file='tore3D_1307.off', max_edge_length=0.2) simplex_tree = rips_complex.create_simplex_tree(max_dimension=3) diag = simplex_tree.persistence() - pplot = gudhi.plot_persistence_diagram(diag, band_boot=0.13) - pplot.show() + plt = gudhi.plot_persistence_diagram(diag, band_boot=0.13) + plt.show() .. plot:: @@ -64,5 +68,5 @@ This function can display the persistence result as a diagram: rips_complex = gudhi.RipsComplex(off_file='tore3D_1307.off', max_edge_length=0.2) simplex_tree = rips_complex.create_simplex_tree(max_dimension=3) diag = simplex_tree.persistence() - pplot = gudhi.plot_persistence_diagram(diag, band_boot=0.13) - pplot.show() + plt = gudhi.plot_persistence_diagram(diag, band_boot=0.13) + plt.show() |