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| author | vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2018-08-03 09:41:38 +0000 |
|---|---|---|
| committer | vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2018-08-03 09:41:38 +0000 |
| commit | d52036da23f887d56d13dd4f93c1049eb44301b1 (patch) | |
| tree | bfc21e634b89c3758a06e4fd05a1c4639cc3b47f /src/cython/doc | |
| parent | aa34489b34f22c30adf001a4db322a57222c3f66 (diff) | |
plot persistence density functionnality with its documentation
Fix some documentation issue in other graphiacl tools
Add scipy as a dependency
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3736 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 6481f1d6aa176bcf587f8875298a91cd22ac0319
Diffstat (limited to 'src/cython/doc')
| -rw-r--r-- | src/cython/doc/persistence_graphical_tools_ref.rst | 1 | ||||
| -rw-r--r-- | src/cython/doc/persistence_graphical_tools_user.rst | 9 |
2 files changed, 7 insertions, 3 deletions
diff --git a/src/cython/doc/persistence_graphical_tools_ref.rst b/src/cython/doc/persistence_graphical_tools_ref.rst index a2c6bcef..54aff4bc 100644 --- a/src/cython/doc/persistence_graphical_tools_ref.rst +++ b/src/cython/doc/persistence_graphical_tools_ref.rst @@ -9,3 +9,4 @@ Persistence graphical tools reference manual .. autofunction:: gudhi.__min_birth_max_death .. autofunction:: gudhi.plot_persistence_barcode .. autofunction:: gudhi.plot_persistence_diagram +.. autofunction:: gudhi.plot_persistence_density diff --git a/src/cython/doc/persistence_graphical_tools_user.rst b/src/cython/doc/persistence_graphical_tools_user.rst index 292915eb..b21de06a 100644 --- a/src/cython/doc/persistence_graphical_tools_user.rst +++ b/src/cython/doc/persistence_graphical_tools_user.rst @@ -43,6 +43,9 @@ This function can display the persistence result as a diagram: legend=True) plt.show() +Persistence density +------------------- + If you want more information on a specific dimension, for instance: .. plot:: @@ -56,7 +59,7 @@ If you want more information on a specific dimension, for instance: gudhi.read_persistence_intervals_grouped_by_dimension(persistence_file=\ persistence_file) dim = 1 - # Display all points with some transparency - plt = gudhi.plot_persistence_diagram([(dim,interval) for interval in diag[dim]], - max_plots=0, alpha=0.1) + # Display persistence density + plt = gudhi.plot_persistence_density([(dim,interval) for interval in diag[dim]], + max_plots=0, legend=True) plt.show() |