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author | vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2017-07-06 15:38:44 +0000 |
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committer | vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2017-07-06 15:38:44 +0000 |
commit | 4832d865981bb74c8afc7240e953adc8f54c52b0 (patch) | |
tree | bbbf138e27985a1c7b8a5f11d3fe5cba6c51d5e0 /src/cython/doc | |
parent | a4b7d528893f992115711225c7d4396de55c6c58 (diff) |
Plot functions now returns a plot that can be modified before to be shown
Add confidence band in plot_persistence_diagram
Cythonization of read_lower_triangular_matrix_from_csv_file and read_persistence_intervals functions
Add Python tests of read functions
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2590 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 522ec31e9ad3a9a688875612d246114704b8c74e
Diffstat (limited to 'src/cython/doc')
-rwxr-xr-x | src/cython/doc/pyplots/barcode_persistence.py | 2 | ||||
-rwxr-xr-x | src/cython/doc/pyplots/diagram_persistence.py | 8 |
2 files changed, 6 insertions, 4 deletions
diff --git a/src/cython/doc/pyplots/barcode_persistence.py b/src/cython/doc/pyplots/barcode_persistence.py index c06ac5a7..b021049f 100755 --- a/src/cython/doc/pyplots/barcode_persistence.py +++ b/src/cython/doc/pyplots/barcode_persistence.py @@ -1,5 +1,5 @@ import gudhi -periodic_cc = gudhi.PeriodicCubicalComplex(perseus_file='../3d_torus.txt') +periodic_cc = gudhi.PeriodicCubicalComplex(perseus_file='3d_torus.txt') diag = periodic_cc.persistence() gudhi.plot_persistence_barcode(diag) diff --git a/src/cython/doc/pyplots/diagram_persistence.py b/src/cython/doc/pyplots/diagram_persistence.py index b4714fe3..56d6c50f 100755 --- a/src/cython/doc/pyplots/diagram_persistence.py +++ b/src/cython/doc/pyplots/diagram_persistence.py @@ -1,5 +1,7 @@ import gudhi -alpha_complex = gudhi.AlphaComplex(off_file='../tore3D_300.off') -diag = alpha_complex.persistence() -gudhi.plot_persistence_diagram(diag) +rips_complex = gudhi.RipsComplex(off_file='tore3D_1307.off', max_edge_length=0.2) +simplex_tree = rips_complex.create_simplex_tree(max_dimension=3) +diag = simplex_tree.persistence() +pplot = gudhi.plot_persistence_diagram(diag, band_boot=0.13) +pplot.show() |