diff options
author | vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2016-06-06 14:54:17 +0000 |
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committer | vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2016-06-06 14:54:17 +0000 |
commit | 4a089fe4840f09b4aabafa06ad53200baa6d6547 (patch) | |
tree | 157100145d7f41c93aed0b275ed6f75c18aeb2fc /src/cython/example | |
parent | 17a700173e489acd763519f24d7321b1b64ad9b0 (diff) |
bar code persistence tool
Copyright modification
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1251 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: ff7a8baeffbcafe6d074786b6a7956d815edd21b
Diffstat (limited to 'src/cython/example')
-rwxr-xr-x | src/cython/example/alpha_complex_example.py | 4 | ||||
-rwxr-xr-x | src/cython/example/alpha_complex_from_file_example.py | 4 | ||||
-rwxr-xr-x | src/cython/example/gudhi_graphical_tools_example.py | 42 | ||||
-rwxr-xr-x | src/cython/example/mini_simplex_tree_example.py | 4 | ||||
-rwxr-xr-x | src/cython/example/random_cubical_complex_example.py | 4 | ||||
-rwxr-xr-x | src/cython/example/rips_complex_example.py | 4 | ||||
-rwxr-xr-x | src/cython/example/rips_persistence_diagram.py | 14 | ||||
-rwxr-xr-x | src/cython/example/simplex_tree_example.py | 4 |
8 files changed, 57 insertions, 23 deletions
diff --git a/src/cython/example/alpha_complex_example.py b/src/cython/example/alpha_complex_example.py index 37c04f23..cfeff5d8 100755 --- a/src/cython/example/alpha_complex_example.py +++ b/src/cython/example/alpha_complex_example.py @@ -8,7 +8,7 @@ import gudhi Author(s): Vincent Rouvreau - Copyright (C) 2016 INRIA Saclay (France) + Copyright (C) 2016 INRIA This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -25,7 +25,7 @@ import gudhi """ __author__ = "Vincent Rouvreau" -__copyright__ = "Copyright (C) 2016 INRIA Saclay (France)" +__copyright__ = "Copyright (C) 2016 INRIA" __license__ = "GPL v3" print("#####################################################################") diff --git a/src/cython/example/alpha_complex_from_file_example.py b/src/cython/example/alpha_complex_from_file_example.py index 9ceb82b1..04b4b279 100755 --- a/src/cython/example/alpha_complex_from_file_example.py +++ b/src/cython/example/alpha_complex_from_file_example.py @@ -10,7 +10,7 @@ import argparse Author(s): Vincent Rouvreau - Copyright (C) 2016 INRIA Saclay (France) + Copyright (C) 2016 INRIA This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -27,7 +27,7 @@ import argparse """ __author__ = "Vincent Rouvreau" -__copyright__ = "Copyright (C) 2016 INRIA Saclay (France)" +__copyright__ = "Copyright (C) 2016 INRIA" __license__ = "GPL v3" print("#####################################################################") diff --git a/src/cython/example/gudhi_graphical_tools_example.py b/src/cython/example/gudhi_graphical_tools_example.py new file mode 100755 index 00000000..c43b2338 --- /dev/null +++ b/src/cython/example/gudhi_graphical_tools_example.py @@ -0,0 +1,42 @@ +#!/usr/bin/env python + +import gudhi + +"""This file is part of the Gudhi Library. The Gudhi library + (Geometric Understanding in Higher Dimensions) is a generic C++ + library for computational topology. + + Author(s): Vincent Rouvreau + + Copyright (C) 2016 INRIA + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. +""" + +__author__ = "Vincent Rouvreau" +__copyright__ = "Copyright (C) 2016 INRIA" +__license__ = "GPL v3" + +print("#####################################################################") +print("Show palette colors values for dimension") + +gudhi.show_palette_values() + +print("#####################################################################") +print("Show bar code persistence example") + +persistence = [(2, (1.0, float('inf'))), (1, (1.4142135623730951, float('inf'))), + (1, (1.4142135623730951, float('inf'))), (0, (0.0, float('inf'))), + (0, (0.0, 1.0)), (0, (0.0, 1.0)), (0, (0.0, 1.0))] +gudhi.bar_code_persistence(persistence) diff --git a/src/cython/example/mini_simplex_tree_example.py b/src/cython/example/mini_simplex_tree_example.py index d7189ddf..7b65a9d6 100755 --- a/src/cython/example/mini_simplex_tree_example.py +++ b/src/cython/example/mini_simplex_tree_example.py @@ -8,7 +8,7 @@ import gudhi Author(s): Vincent Rouvreau - Copyright (C) 2016 INRIA Saclay (France) + Copyright (C) 2016 INRIA This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -25,7 +25,7 @@ import gudhi """ __author__ = "Vincent Rouvreau" -__copyright__ = "Copyright (C) 2016 INRIA Saclay (France)" +__copyright__ = "Copyright (C) 2016 INRIA" __license__ = "GPL v3" print("#####################################################################") diff --git a/src/cython/example/random_cubical_complex_example.py b/src/cython/example/random_cubical_complex_example.py index b479e2e6..147eaa49 100755 --- a/src/cython/example/random_cubical_complex_example.py +++ b/src/cython/example/random_cubical_complex_example.py @@ -12,7 +12,7 @@ import operator Author(s): Vincent Rouvreau - Copyright (C) 2016 INRIA Saclay (France) + Copyright (C) 2016 INRIA This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -29,7 +29,7 @@ import operator """ __author__ = "Vincent Rouvreau" -__copyright__ = "Copyright (C) 2016 INRIA Saclay (France)" +__copyright__ = "Copyright (C) 2016 INRIA" __license__ = "GPL v3" parser = argparse.ArgumentParser(description='Random cubical complex.', diff --git a/src/cython/example/rips_complex_example.py b/src/cython/example/rips_complex_example.py index 449ea2b3..65246c9c 100755 --- a/src/cython/example/rips_complex_example.py +++ b/src/cython/example/rips_complex_example.py @@ -8,7 +8,7 @@ import gudhi Author(s): Vincent Rouvreau - Copyright (C) 2016 INRIA Saclay (France) + Copyright (C) 2016 INRIA This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -25,7 +25,7 @@ import gudhi """ __author__ = "Vincent Rouvreau" -__copyright__ = "Copyright (C) 2016 INRIA Saclay (France)" +__copyright__ = "Copyright (C) 2016 INRIA" __license__ = "GPL v3" print("#####################################################################") diff --git a/src/cython/example/rips_persistence_diagram.py b/src/cython/example/rips_persistence_diagram.py index 3e95f2cc..57f25b22 100755 --- a/src/cython/example/rips_persistence_diagram.py +++ b/src/cython/example/rips_persistence_diagram.py @@ -1,7 +1,6 @@ #!/usr/bin/env python import gudhi -import matplotlib.pyplot as plt """This file is part of the Gudhi Library. The Gudhi library (Geometric Understanding in Higher Dimensions) is a generic C++ @@ -9,7 +8,7 @@ import matplotlib.pyplot as plt Author(s): Marc Glisse - Copyright (C) 2016 INRIA Saclay (France) + Copyright (C) 2016 INRIA This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -26,7 +25,7 @@ import matplotlib.pyplot as plt """ __author__ = "Marc Glisse" -__copyright__ = "Copyright (C) 2016 INRIA Saclay (France)" +__copyright__ = "Copyright (C) 2016 INRIA" __license__ = "GPL v3" print("#####################################################################") @@ -37,11 +36,4 @@ rips = gudhi.RipsComplex(points=[[0, 0], [1, 0], [0, 1], [1, 1]], diag = rips.persistence(homology_coeff_field=2, min_persistence=0) print("diag=", diag) -diag0=[i[1] for i in diag if i[0]==0] -diag1=[i[1] for i in diag if i[0]==1] - -plt.plot([i[0] for i in diag0],[min(i[1],1.5) for i in diag0],'ro', - [i[0] for i in diag1],[i[1] for i in diag1],'bs',[-.2,1.5],[-.2,1.5], - '-') -plt.axis([-.2,1.5,-.2,1.5]) -plt.show() +gudhi.bar_code_persistence(diag) diff --git a/src/cython/example/simplex_tree_example.py b/src/cython/example/simplex_tree_example.py index 45d57c53..cc33ed6e 100755 --- a/src/cython/example/simplex_tree_example.py +++ b/src/cython/example/simplex_tree_example.py @@ -8,7 +8,7 @@ import gudhi Author(s): Vincent Rouvreau - Copyright (C) 2016 INRIA Saclay (France) + Copyright (C) 2016 INRIA This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -25,7 +25,7 @@ import gudhi """ __author__ = "Vincent Rouvreau" -__copyright__ = "Copyright (C) 2016 INRIA Saclay (France)" +__copyright__ = "Copyright (C) 2016 INRIA" __license__ = "GPL v3" print("#####################################################################") |