merged trunk

git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/kernels@3644 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: 2be9ba6b6a381e677081a751e7d8f8c1d79385b0

2 files changed, 30 insertions, 9 deletions

diff --git a/src/cython/include/Persistent_cohomology_interface.h b/src/cython/include/Persistent_cohomology_interface.h
index a86b1187..8cf71a4e 100644
--- a/src/cython/include/Persistent_cohomology_interface.h
+++ b/src/cython/include/Persistent_cohomology_interface.h
@@ -85,6 +85,32 @@ persistent_cohomology::Persistent_cohomology<FilteredComplex, persistent_cohomol
     return persistence;
   }
 
+  std::vector<std::pair<std::vector<int>, std::vector<int>>> persistence_pairs() {
+    auto pairs = persistent_cohomology::Persistent_cohomology<FilteredComplex,
+      persistent_cohomology::Field_Zp>::get_persistent_pairs();
+
+    std::vector<std::pair<std::vector<int>, std::vector<int>>> persistence_pairs;
+    persistence_pairs.reserve(pairs.size());
+    for (auto pair : pairs) {
+      std::vector<int> birth;
+      if (get<0>(pair) != stptr_->null_simplex()) {
+        for (auto vertex : stptr_->simplex_vertex_range(get<0>(pair))) {
+          birth.push_back(vertex);
+        }
+      }
+
+      std::vector<int> death;
+      if (get<1>(pair) != stptr_->null_simplex()) {
+        for (auto vertex : stptr_->simplex_vertex_range(get<1>(pair))) {
+          death.push_back(vertex);
+        }
+      }
+
+      persistence_pairs.push_back(std::make_pair(birth, death));
+    }
+    return persistence_pairs;
+  }
+
  private:
   // A copy
   FilteredComplex* stptr_;
diff --git a/src/cython/include/Tangential_complex_interface.h b/src/cython/include/Tangential_complex_interface.h
index 2772460a..71418886 100644
--- a/src/cython/include/Tangential_complex_interface.h
+++ b/src/cython/include/Tangential_complex_interface.h
@@ -45,24 +45,19 @@ class Tangential_complex_interface {
   using TC = Tangential_complex<Dynamic_kernel, CGAL::Dynamic_dimension_tag, CGAL::Parallel_tag>;
 
  public:
-  Tangential_complex_interface(const std::vector<std::vector<double>>& points) {
+  Tangential_complex_interface(int intrisic_dim, const std::vector<std::vector<double>>& points) {
     Dynamic_kernel k;
-    unsigned intrisic_dim = 0;
-    if (points.size() > 0)
-      intrisic_dim = points[0].size() - 1;
 
     tangential_complex_ = new TC(points, intrisic_dim, k);
     tangential_complex_->compute_tangential_complex();
     num_inconsistencies_ = tangential_complex_->number_of_inconsistent_simplices();
   }
 
-  Tangential_complex_interface(const std::string& off_file_name, bool from_file = true) {
-    Gudhi::Points_off_reader<Point_d> off_reader(off_file_name);
+  Tangential_complex_interface(int intrisic_dim, const std::string& off_file_name, bool from_file = true) {
     Dynamic_kernel k;
-    unsigned intrisic_dim = 0;
+
+    Gudhi::Points_off_reader<Point_d> off_reader(off_file_name);
     std::vector<Point_d> points = off_reader.get_point_cloud();
-    if (points.size() > 0)
-      intrisic_dim = points[0].size() - 1;
 
     tangential_complex_ = new TC(points, intrisic_dim, k);
     tangential_complex_->compute_tangential_complex();