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author | Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com> | 2021-06-09 11:50:37 +0200 |
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committer | GitHub <noreply@github.com> | 2021-06-09 11:50:37 +0200 |
commit | bbb0e9841af341882a28624081eac9611ea326c0 (patch) | |
tree | d6e0c7266ae0d197ffd1c82d3505cdbcf42b11fd /src/python/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py | |
parent | f1effb5b5bf30275a692b51528ec068f7cef84ab (diff) | |
parent | 845b02ff408eb50207165b8e11136e4b1888612a (diff) |
Merge branch 'master' into python_weighted_alpha_complex
Diffstat (limited to 'src/python/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py')
-rwxr-xr-x | src/python/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/src/python/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py b/src/python/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py index 236d085d..8a9cc857 100755 --- a/src/python/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py +++ b/src/python/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py @@ -21,11 +21,12 @@ parser = argparse.ArgumentParser( description="RipsComplex creation from " "a distance matrix read in a csv file.", epilog="Example: " "example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py " - "-f ../data/distance_matrix/lower_triangular_distance_matrix.csv -e 12.0 -d 3" + "-f ../data/distance_matrix/lower_triangular_distance_matrix.csv -s , -e 12.0 -d 3" "- Constructs a Rips complex with the " "distance matrix from the given csv file.", ) parser.add_argument("-f", "--file", type=str, required=True) +parser.add_argument("-s", "--separator", type=str, required=True) parser.add_argument("-e", "--max_edge_length", type=float, default=0.5) parser.add_argument("-d", "--max_dimension", type=int, default=1) parser.add_argument("-b", "--band", type=float, default=0.0) @@ -44,7 +45,7 @@ print("RipsComplex creation from distance matrix read in a csv file") message = "RipsComplex with max_edge_length=" + repr(args.max_edge_length) print(message) -distance_matrix = gudhi.read_lower_triangular_matrix_from_csv_file(csv_file=args.file) +distance_matrix = gudhi.read_lower_triangular_matrix_from_csv_file(csv_file=args.file, separator=args.separator) rips_complex = gudhi.RipsComplex( distance_matrix=distance_matrix, max_edge_length=args.max_edge_length ) |