diff options
| -rw-r--r-- | debian/changelog | 11 | ||||
| -rw-r--r-- | debian/compat | 1 | ||||
| -rw-r--r-- | debian/control | 72 | ||||
| -rw-r--r-- | debian/copyright | 86 | ||||
| -rw-r--r-- | debian/libgudhi-dev.docs | 1 | ||||
| -rw-r--r-- | debian/libgudhi-dev.install | 2 | ||||
| -rw-r--r-- | debian/libgudhi-doc.install | 1 | ||||
| -rw-r--r-- | debian/libgudhi-examples.docs | 1 | ||||
| -rw-r--r-- | debian/libgudhi-examples.install | 1 | ||||
| -rw-r--r-- | debian/patches/0001-Disable-some-tests-that-uncleanly-write-outside-of-t.patch | 51 | ||||
| -rw-r--r-- | debian/patches/series | 1 | ||||
| -rwxr-xr-x | debian/rules | 26 | ||||
| -rw-r--r-- | debian/source/format | 1 | ||||
| -rw-r--r-- | debian/watch | 5 |
14 files changed, 260 insertions, 0 deletions
diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 00000000..d99b4cac --- /dev/null +++ b/debian/changelog @@ -0,0 +1,11 @@ +gudhi (2.0.0+ds-1) UNRELEASED; urgency=medium + + * New upstream major release. + + -- Gard Spreemann <gspreemann@gmail.com> Thu, 20 Apr 2017 11:25:11 +0200 + +gudhi (1.3.1+ds-1) unstable; urgency=medium + + * Initial packaging. (Closes: #840686) + + -- Gard Spreemann <gspreemann@gmail.com> Thu, 13 Oct 2016 21:35:28 +0200 diff --git a/debian/compat b/debian/compat new file mode 100644 index 00000000..f599e28b --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +10 diff --git a/debian/control b/debian/control new file mode 100644 index 00000000..a7df8759 --- /dev/null +++ b/debian/control @@ -0,0 +1,72 @@ +Source: gudhi +Maintainer: Gard Spreemann <gspreemann@gmail.com> +Section: math +Priority: optional +Standards-Version: 3.9.8.0 +Build-Depends: cmake (>= 2.6), cython3, debhelper (>= 10), doxygen, graphviz, + libboost-chrono-dev (>= 1.48), libboost-filesystem-dev (>= 1.48), + libboost-program-options-dev (>= 1.48), libboost-system-dev (>= 1.48), + libboost-test-dev (>= 1.48), libboost-timer-dev (>= 1.48), + libcgal-dev (>= 4.8.1), libeigen3-dev (>= 3.1.0), libgmp-dev (>= 4.2), + libtbb-dev, python3-dev, texlive-science +Homepage: http://gudhi.gforge.inria.fr/ +Vcs-Browser: https://git.nonempty.org/debian-gudhi +Vcs-Git: http://git.nonempty.org/debian-gudhi -b debian/sid + +Package: libgudhi-dev +Section: libdevel +Architecture: all +Multi-Arch: foreign +Depends: ${misc:Depends}, libboost-chrono-dev (>= 1.48), + libboost-filesystem-dev (>= 1.48), libboost-program-options-dev (>= 1.48), + libboost-system-dev (>= 1.48), libboost-test-dev (>= 1.48), + libboost-timer-dev (>= 1.48), libcgal-dev (>= 4.8.1), + libeigen3-dev (>= 3.1.0), libgmp-dev (>= 4.2), libtbb-dev +Suggests: libgudhi-doc, libgudhi-examples +Description: Generic open source C++ library for Topological Data Analysis + The GUDHI library is a generic open source C++ library for + Topological Data Analysis (TDA) and Higher Dimensional Geometry + Understanding. The library offers state-of-the-art data structures + and algorithms to construct simplicial complexes and compute + persistent homology. + . + The GUDHI library is developed as part of the GUDHI project supported + by the European Research Council. + . + See the libgudhi-examples package for example programs using the + library. + +Package: libgudhi-examples +Section: libs +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Recommends: libgudhi-doc +Description: Generic open source C++ library for Topological Data Analysis + The GUDHI library is a generic open source C++ library for + Topological Data Analysis (TDA) and Higher Dimensional Geometry + Understanding. The library offers state-of-the-art data structures + and algorithms to construct simplicial complexes and compute + persistent homology. + . + The GUDHI library is developed as part of the GUDHI project supported + by the European Research Council. + . + This package contains some upstream example programs and their source + code. + +Package: libgudhi-doc +Section: doc +Architecture: all +Multi-Arch: foreign +Depends: ${misc:Depends} +Description: Generic open source C++ library for Topological Data Analysis + The GUDHI library is a generic open source C++ library for + Topological Data Analysis (TDA) and Higher Dimensional Geometry + Understanding. The library offers state-of-the-art data structures + and algorithms to construct simplicial complexes and compute + persistent homology. + . + The GUDHI library is developed as part of the GUDHI project supported + by the European Research Council. + . + This package contains documentation for the package. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 00000000..d3fd2e8f --- /dev/null +++ b/debian/copyright @@ -0,0 +1,86 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: gudhi +Files-Excluded: GudhUI/utils/homsimpl +Source: http://gudhi.gforge.inria.fr + Unnecessary precompiled binary deleted. + +Files: * +Copyright: 2014-2017 Inria Sophia Antipolis - Méditerranée + 2014-2017 Inria Saclay - Île-de-France + 2014-2017 Université Nice Sophia Antipolis +License: GPL-3.0+ + +Files: cmake/modules/FindEigen3.cmake +Copyright: 2006, 2007 Montel Laurent <montel@kde.org> + 2008, 2009 Gael Guennebaud <g.gael@free.fr> + 2009 Benoit Jacob <jacob.benoit.1@gmail.com> +License: BSD-2-clause + +Files: cmake/modules/FindTBB.cmake +Copyright: Hannes Hofmann +License: MIT + Permission is hereby granted, free of charge, to any person obtaining + a copy of this software and associated documentation files (the + "Software"), to deal in the Software without restriction, including + without limitation the rights to use, copy, modify, merge, publish, + distribute, sublicense, and/or sell copies of the Software, and to + permit persons to whom the Software is furnished to do so, subject to + the following conditions: + . + The above copyright notice and this permission notice shall be + included in all copies or substantial portions of the Software. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, + EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF + MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND + NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS + BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN + ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN + CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE + SOFTWARE. + +Files: debian/* +Copyright: 2016 Gard Spreemann <gspreemann@gmail.com> +License: GPL-3.0+ + +License: GPL-3.0+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <https://www.gnu.org/licenses/>. + . + On Debian systems, the complete text of the GNU General + Public License version 3 can be found in "/usr/share/common-licenses/GPL-3". + +License: BSD-2-clause + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + . + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + . + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + . + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR + A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT + HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS + OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED + AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY + WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE.
\ No newline at end of file diff --git a/debian/libgudhi-dev.docs b/debian/libgudhi-dev.docs new file mode 100644 index 00000000..e9849ee8 --- /dev/null +++ b/debian/libgudhi-dev.docs @@ -0,0 +1 @@ +biblio
\ No newline at end of file diff --git a/debian/libgudhi-dev.install b/debian/libgudhi-dev.install new file mode 100644 index 00000000..3035131d --- /dev/null +++ b/debian/libgudhi-dev.install @@ -0,0 +1,2 @@ +debian/tmp/usr/include/gudhi/ usr/include/ +debian/tmp/usr/share/gudhi/*.cmake usr/lib/cmake/gudhi/ diff --git a/debian/libgudhi-doc.install b/debian/libgudhi-doc.install new file mode 100644 index 00000000..e3362a5f --- /dev/null +++ b/debian/libgudhi-doc.install @@ -0,0 +1 @@ +doc/html/* usr/share/doc/libgudhi/html/
\ No newline at end of file diff --git a/debian/libgudhi-examples.docs b/debian/libgudhi-examples.docs new file mode 100644 index 00000000..dbf60533 --- /dev/null +++ b/debian/libgudhi-examples.docs @@ -0,0 +1 @@ +debian/tmp/usr/share/doc/libgudhi-examples/*
\ No newline at end of file diff --git a/debian/libgudhi-examples.install b/debian/libgudhi-examples.install new file mode 100644 index 00000000..dba26b58 --- /dev/null +++ b/debian/libgudhi-examples.install @@ -0,0 +1 @@ +debian/tmp/usr/bin/*
\ No newline at end of file diff --git a/debian/patches/0001-Disable-some-tests-that-uncleanly-write-outside-of-t.patch b/debian/patches/0001-Disable-some-tests-that-uncleanly-write-outside-of-t.patch new file mode 100644 index 00000000..463e13d1 --- /dev/null +++ b/debian/patches/0001-Disable-some-tests-that-uncleanly-write-outside-of-t.patch @@ -0,0 +1,51 @@ +From 1ecf2bf414b0cacf43fb05e4ba33528c7cfc04a1 Mon Sep 17 00:00:00 2001 +From: Gard Spreemann <gspreemann@gmail.com> +Date: Fri, 21 Apr 2017 11:55:21 +0200 +Subject: [PATCH] Disable some tests that uncleanly write outside of the build + directory. + +--- + example/Bitmap_cubical_complex/CMakeLists.txt | 21 +++++++++++---------- + 1 file changed, 11 insertions(+), 10 deletions(-) + +diff --git a/example/Bitmap_cubical_complex/CMakeLists.txt b/example/Bitmap_cubical_complex/CMakeLists.txt +index 241a11e..82fd911 100644 +--- a/example/Bitmap_cubical_complex/CMakeLists.txt ++++ b/example/Bitmap_cubical_complex/CMakeLists.txt +@@ -7,11 +7,11 @@ if (TBB_FOUND) + target_link_libraries(Bitmap_cubical_complex ${TBB_LIBRARIES}) + endif() + +-add_test(NAME Bitmap_cubical_complex_example_persistence_one_sphere COMMAND $<TARGET_FILE:Bitmap_cubical_complex> +- "${CMAKE_SOURCE_DIR}/data/bitmap/CubicalOneSphere.txt") ++#add_test(NAME Bitmap_cubical_complex_example_persistence_one_sphere COMMAND $<TARGET_FILE:Bitmap_cubical_complex> ++# "${CMAKE_SOURCE_DIR}/data/bitmap/CubicalOneSphere.txt") + +-add_test(NAME Bitmap_cubical_complex_example_persistence_two_sphere COMMAND $<TARGET_FILE:Bitmap_cubical_complex> +- "${CMAKE_SOURCE_DIR}/data/bitmap/CubicalTwoSphere.txt") ++#add_test(NAME Bitmap_cubical_complex_example_persistence_two_sphere COMMAND $<TARGET_FILE:Bitmap_cubical_complex> ++# "${CMAKE_SOURCE_DIR}/data/bitmap/CubicalTwoSphere.txt") + + add_executable ( Random_bitmap_cubical_complex Random_bitmap_cubical_complex.cpp ) + target_link_libraries(Random_bitmap_cubical_complex ${Boost_SYSTEM_LIBRARY}) +@@ -27,10 +27,11 @@ if (TBB_FOUND) + target_link_libraries(Bitmap_cubical_complex_periodic_boundary_conditions ${TBB_LIBRARIES}) + endif() + +-add_test(NAME Bitmap_cubical_complex_example_periodic_boundary_conditions_2d_torus +- COMMAND $<TARGET_FILE:Bitmap_cubical_complex_periodic_boundary_conditions> +- "${CMAKE_SOURCE_DIR}/data/bitmap/2d_torus.txt") ++#add_test(NAME Bitmap_cubical_complex_example_periodic_boundary_conditions_2d_torus ++# COMMAND $<TARGET_FILE:Bitmap_cubical_complex_periodic_boundary_conditions> ++# "${CMAKE_SOURCE_DIR}/data/bitmap/2d_torus.txt") + +-add_test(NAME Bitmap_cubical_complex_example_periodic_boundary_conditions_3d_torus +- COMMAND $<TARGET_FILE:Bitmap_cubical_complex_periodic_boundary_conditions> +- "${CMAKE_SOURCE_DIR}/data/bitmap/3d_torus.txt") ++#add_test(NAME Bitmap_cubical_complex_example_periodic_boundary_conditions_3d_torus ++# COMMAND $<TARGET_FILE:Bitmap_cubical_complex_periodic_boundary_conditions> ++# "${CMAKE_SOURCE_DIR}/data/bitmap/3d_torus.txt") ++ +-- +2.11.0 + diff --git a/debian/patches/series b/debian/patches/series new file mode 100644 index 00000000..3b2c6c02 --- /dev/null +++ b/debian/patches/series @@ -0,0 +1 @@ +0001-Disable-some-tests-that-uncleanly-write-outside-of-t.patch diff --git a/debian/rules b/debian/rules new file mode 100755 index 00000000..52551d70 --- /dev/null +++ b/debian/rules @@ -0,0 +1,26 @@ +#!/usr/bin/make -f + +export DEB_BUILD_MAINT_OPTIONS = hardening=+all +CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS) +CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS) +LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS) + +%: +# The --buildirectory=build is there so that we can easily get a hold +# of documentation and examples, which are not installed by upstream. + dh $@ --builddirectory=build + +override_dh_auto_clean: + rm -f GUDHIVersion.cmake + rm -rf doc/html + dh_auto_clean + +override_dh_auto_build: + make -C build doxygen + dh_auto_build + +override_dh_auto_install: + find build/example -executable -type f -exec sh -c 'install -D $$0 debian/tmp/usr/bin/libgudhi-example-$$(basename $$0)' {} \; + find example -type f \( -name '*.cpp' -o \( -name '*.txt' -a ! -iname 'cmake*' \) \) -exec sh -c 'install -D -m 644 $$0 debian/tmp/usr/share/doc/libgudhi-examples/$$0' {} \; + dh_auto_install + diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 00000000..163aaf8d --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/watch b/debian/watch new file mode 100644 index 00000000..4b90f13d --- /dev/null +++ b/debian/watch @@ -0,0 +1,5 @@ +version=3 + +opts="dversionmangle=s/\+ds(\.\d+)?$//,filenamemangle=s/\S+\/v?(\S+)\.tar\.gz/gudhi-$1\.tar\.gz/" \ + https://gforge.inria.fr/frs/?group_id=3865 \ + .*\/.*GUDHI_(\d[\d.-]*)\.tar\.gz |