1 files changed, 9 insertions, 10 deletions

diff --git a/src/Alpha_complex/utilities/alpha_complex_3d_persistence.cpp b/src/Alpha_complex/utilities/alpha_complex_3d_persistence.cpp
index 28daca5e..0a021a0f 100644
--- a/src/Alpha_complex/utilities/alpha_complex_3d_persistence.cpp
+++ b/src/Alpha_complex/utilities/alpha_complex_3d_persistence.cpp
@@ -30,8 +30,6 @@
 #include <CGAL/Exact_predicates_inexact_constructions_kernel.h>
 #include <CGAL/Delaunay_triangulation_3.h>
 #include <CGAL/Alpha_shape_3.h>
-#include <CGAL/Alpha_shape_vertex_base_3.h>
-#include <CGAL/Alpha_shape_cell_base_3.h>
 #include <CGAL/iterator.h>
 
 #include <fstream>
@@ -42,6 +40,7 @@
 #include <utility>
 #include <list>
 #include <vector>
+#include <cstdlib>
 
 #include "alpha_complex_3d_helper.h"
 
@@ -76,7 +75,8 @@ using Simplex_tree_vertex = ST::Vertex_handle;
 using Alpha_shape_simplex_tree_map = std::map<Alpha_shape_3::Vertex_handle, Simplex_tree_vertex>;
 using Alpha_shape_simplex_tree_pair = std::pair<Alpha_shape_3::Vertex_handle, Simplex_tree_vertex>;
 using Simplex_tree_vector_vertex = std::vector<Simplex_tree_vertex>;
-using PCOH = Gudhi::persistent_cohomology::Persistent_cohomology<ST, Gudhi::persistent_cohomology::Field_Zp>;
+using Persistent_cohomology =
+    Gudhi::persistent_cohomology::Persistent_cohomology<ST, Gudhi::persistent_cohomology::Field_Zp>;
 
 void program_options(int argc, char *argv[], std::string &off_file_points, std::string &output_file_diag,
                      int &coeff_field_characteristic, Filtration_value &min_persistence);
@@ -132,28 +132,28 @@ int main(int argc, char **argv) {
   Filtration_value filtration_max = 0.0;
   for (auto object_iterator : the_objects) {
     // Retrieve Alpha shape vertex list from object
-    if (const Cell_handle *cell = CGAL::object_cast<Cell_handle>(&object_iterator)) {
+    if (const Cell_handle* cell = CGAL::object_cast<Cell_handle>(&object_iterator)) {
       vertex_list = from_cell<Vertex_list, Cell_handle>(*cell);
       count_cells++;
       if (dim_max < 3) {
         // Cell is of dim 3
         dim_max = 3;
       }
-    } else if (const Facet *facet = CGAL::object_cast<Facet>(&object_iterator)) {
+    } else if (const Facet* facet = CGAL::object_cast<Facet>(&object_iterator)) {
       vertex_list = from_facet<Vertex_list, Facet>(*facet);
       count_facets++;
       if (dim_max < 2) {
         // Facet is of dim 2
         dim_max = 2;
       }
-    } else if (const Edge_3 *edge = CGAL::object_cast<Edge_3>(&object_iterator)) {
+    } else if (const Edge_3* edge = CGAL::object_cast<Edge_3>(&object_iterator)) {
       vertex_list = from_edge<Vertex_list, Edge_3>(*edge);
       count_edges++;
       if (dim_max < 1) {
         // Edge_3 is of dim 1
         dim_max = 1;
       }
-    } else if (const Vertex_handle *vertex = CGAL::object_cast<Vertex_handle>(&object_iterator)) {
+    } else if (const Vertex_handle* vertex = CGAL::object_cast<Vertex_handle>(&object_iterator)) {
       count_vertices++;
       vertex_list = from_vertex<Vertex_list, Vertex_handle>(*vertex);
     }
@@ -179,7 +179,7 @@ int main(int argc, char **argv) {
       }
     }
     // Construction of the simplex_tree
-    Filtration_value filtr = /*std::sqrt*/ (*the_alpha_value_iterator);
+    Filtration_value filtr = /*std::sqrt*/(*the_alpha_value_iterator);
 #ifdef DEBUG_TRACES
     std::cout << "filtration = " << filtr << std::endl;
 #endif  // DEBUG_TRACES
@@ -192,7 +192,6 @@ int main(int argc, char **argv) {
     else
       std::cout << "This shall not happen" << std::endl;
   }
-  simplex_tree.set_dimension(dim_max);
 
 #ifdef DEBUG_TRACES
   std::cout << "vertices \t\t" << count_vertices << std::endl;
@@ -218,7 +217,7 @@ int main(int argc, char **argv) {
 
   std::cout << "Simplex_tree dim: " << simplex_tree.dimension() << std::endl;
   // Compute the persistence diagram of the complex
-  PCOH pcoh(simplex_tree);
+  Persistent_cohomology pcoh(simplex_tree, true);
   // initializes the coefficient field for homology
   pcoh.init_coefficients(coeff_field_characteristic);