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+/* This file is part of the Gudhi Library. The Gudhi library
+ * (Geometric Understanding in Higher Dimensions) is a generic C++
+ * library for computational topology.
+ *
+ * Author(s): Pawel Dlotko
+ *
+ * Copyright (C) 2015 INRIA Sophia-Saclay (France)
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+// for persistence algorithm
+#include <gudhi/reader_utils.h>
+#include <gudhi/Bitmap_cubical_complex.h>
+#include <gudhi/Persistent_cohomology.h>
+
+#include <boost/program_options.hpp>
+
+// standard stuff
+#include <iostream>
+#include <sstream>
+
+using namespace Gudhi;
+using namespace Gudhi::persistent_cohomology;
+using namespace std;
+
+int main(int argc, char** argv) {
+ cout << "This program computes persistent homology, by using Bitmap_cubical_complex class, of cubical complexes "
+ "provided in text files in Perseus style (the only numbed in the first line is a dimension D of a cubical "
+ "complex. In the lines I between 2 and D+1 there are numbers of top dimensional cells in the direction I. Let N "
+ "denote product of the numbers in the lines between 2 and D. In the lines D+2 to D+2+N there are filtrations of "
+ "top dimensional cells. We assume that the cells are in the lexicographical order. See CubicalOneSphere.txt or "
+ "CubicalTwoSphere.txt for example." << endl;
+
+ int p = 2;
+ double min_persistence = 0;
+
+ if (argc != 2) {
+ cout << "Wrong number of parameters. Please provide the name of a file with a Perseus style cubical complex at the "
+ "input. The program will now terminate.\n";
+ return 1;
+ }
+
+ Bitmap_cubical_complex<double> b(argv[1]);
+
+
+ // Compute the persistence diagram of the complex
+ persistent_cohomology::Persistent_cohomology< Bitmap_cubical_complex<double>, Field_Zp > pcoh(b);
+ pcoh.init_coefficients(p); // initializes the coefficient field for homology
+ pcoh.compute_persistent_cohomology(min_persistence);
+
+
+ stringstream ss;
+ ss << argv[1] << "_persistence";
+ std::ofstream out((char*) ss.str().c_str());
+ pcoh.output_diagram(out);
+ out.close();
+
+ return 0;
+}