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-rw-r--r--src/Cech_complex/include/gudhi/Cech_complex_blocker.h98
1 files changed, 88 insertions, 10 deletions
diff --git a/src/Cech_complex/include/gudhi/Cech_complex_blocker.h b/src/Cech_complex/include/gudhi/Cech_complex_blocker.h
index 31b9aab5..f7f86534 100644
--- a/src/Cech_complex/include/gudhi/Cech_complex_blocker.h
+++ b/src/Cech_complex/include/gudhi/Cech_complex_blocker.h
@@ -11,10 +11,11 @@
#ifndef CECH_COMPLEX_BLOCKER_H_
#define CECH_COMPLEX_BLOCKER_H_
-#include <gudhi/distance_functions.h> // for Gudhi::Minimal_enclosing_ball_radius
+#include <CGAL/NT_converter.h> // for casting from FT to double
#include <iostream>
#include <vector>
+#include <set>
#include <cmath> // for std::sqrt
namespace Gudhi {
@@ -35,28 +36,104 @@ namespace cech_complex {
*
* \tparam Chech_complex is required by the blocker.
*/
-template <typename SimplicialComplexForCech, typename Cech_complex>
+template <typename SimplicialComplexForCech, typename Cech_complex, typename Kernel>
class Cech_blocker {
private:
- using Point_cloud = typename Cech_complex::Point_cloud;
using Simplex_handle = typename SimplicialComplexForCech::Simplex_handle;
using Filtration_value = typename SimplicialComplexForCech::Filtration_value;
public:
+
+ using Point_d = typename Kernel::Point_d;
+ // Numeric type of coordinates in the kernel
+ using FT = typename Kernel::FT;
+ // Sphere is a pair of point and squared radius.
+ using Sphere = typename std::pair<Point_d, FT>;
+
+ template<class PointIterator>
+ FT get_squared_radius(PointIterator begin, PointIterator end) const {
+ return kernel_.compute_squared_radius_d_object()(begin, end);
+ }
+
+ template<class PointIterator>
+ Sphere get_sphere(PointIterator begin, PointIterator end) const {
+ Point_d c = kernel_.construct_circumcenter_d_object()(begin, end);
+ FT r = kernel_.squared_distance_d_object()(c, *begin);
+ return std::make_pair(std::move(c), std::move(r));
+ }
+
+
/** \internal \brief Čech complex blocker operator() - the oracle - assigns the filtration value from the simplex
* radius and returns if the simplex expansion must be blocked.
* \param[in] sh The Simplex_handle.
* \return true if the simplex radius is greater than the Cech_complex max_radius*/
bool operator()(Simplex_handle sh) {
- Point_cloud points;
- for (auto vertex : sc_ptr_->simplex_vertex_range(sh)) {
- points.push_back(cc_ptr_->get_point(vertex));
-#ifdef DEBUG_TRACES
- std::clog << "#(" << vertex << ")#";
-#endif // DEBUG_TRACES
+ using Point_cloud = std::vector<Point_d>;
+ CGAL::NT_converter<FT, double> cast_to_double;
+ Filtration_value radius = 0.;
+
+ // for each face of simplex sh, test outsider point is indeed inside enclosing ball, if yes, take it and exit loop, otherwise, new sphere is circumsphere of all vertices
+ Sphere min_enclos_ball;
+ CGAL::NT_converter<double, FT> cast_to_FT;
+ min_enclos_ball.second = cast_to_FT(std::numeric_limits<double>::max());
+ Point_cloud face_points;
+ for (auto face : sc_ptr_->boundary_simplex_range(sh)) {
+ // Find which vertex of sh is missing in face. We rely on the fact that simplex_vertex_range is sorted.
+ auto longlist = sc_ptr_->simplex_vertex_range(sh);
+ auto shortlist = sc_ptr_->simplex_vertex_range(face);
+
+ auto longiter = std::begin(longlist);
+ auto shortiter = std::begin(shortlist);
+ auto enditer = std::end(shortlist);
+ while(shortiter != enditer && *longiter == *shortiter) { ++longiter; ++shortiter; }
+ auto extra = *longiter; // Vertex_handle
+
+ for (auto vertex : sc_ptr_->simplex_vertex_range(face)) {
+ face_points.push_back(cc_ptr_->get_point(vertex));
+ #ifdef DEBUG_TRACES
+ std::clog << "#(" << vertex << ")#";
+ #endif // DEBUG_TRACES
+ }
+ Sphere sph;
+ auto k = sc_ptr_->key(face);
+ if(k != sc_ptr_->null_key()) {
+ sph = cc_ptr_->get_cache().at(k);
+ }
+ else {
+ sph = get_sphere(face_points.cbegin(), face_points.cend());
+ }
+ face_points.clear();
+
+ if (kernel_.squared_distance_d_object()(sph.first, cc_ptr_->get_point(extra)) <= sph.second) {
+ radius = std::sqrt(cast_to_double(sph.second));
+ #ifdef DEBUG_TRACES
+ std::clog << "circumcenter: " << sph.first << ", radius: " << radius << std::endl;
+ #endif // DEBUG_TRACES
+ if (cast_to_double(sph.second) < cast_to_double(min_enclos_ball.second))
+ min_enclos_ball = sph;
+ }
+ }
+ // Get the minimal radius of all faces enclosing balls if exists
+ if(cast_to_double(min_enclos_ball.second) != std::numeric_limits<double>::max()) {
+ radius = std::sqrt(cast_to_double(min_enclos_ball.second));
+
+ sc_ptr_->assign_key(sh, cc_ptr_->get_cache().size());
+ cc_ptr_->get_cache().push_back(min_enclos_ball);
}
- Filtration_value radius = Gudhi::Minimal_enclosing_ball_radius()(points);
+
+ if (radius == 0.) { // Spheres of each face don't contain the whole simplex
+ Point_cloud points;
+ for (auto vertex : sc_ptr_->simplex_vertex_range(sh)) {
+ points.push_back(cc_ptr_->get_point(vertex));
+ }
+ Sphere sph = get_sphere(points.cbegin(), points.cend());
+ radius = std::sqrt(cast_to_double(sph.second));
+
+ sc_ptr_->assign_key(sh, cc_ptr_->get_cache().size());
+ cc_ptr_->get_cache().push_back(sph);
+ }
+
#ifdef DEBUG_TRACES
if (radius > cc_ptr_->max_radius()) std::clog << "radius > max_radius => expansion is blocked\n";
#endif // DEBUG_TRACES
@@ -70,6 +147,7 @@ class Cech_blocker {
private:
SimplicialComplexForCech* sc_ptr_;
Cech_complex* cc_ptr_;
+ Kernel kernel_;
};
} // namespace cech_complex