diff options
Diffstat (limited to 'src/Cech_complex/include/gudhi/Cech_complex_blocker.h')
-rw-r--r-- | src/Cech_complex/include/gudhi/Cech_complex_blocker.h | 98 |
1 files changed, 88 insertions, 10 deletions
diff --git a/src/Cech_complex/include/gudhi/Cech_complex_blocker.h b/src/Cech_complex/include/gudhi/Cech_complex_blocker.h index 31b9aab5..f7f86534 100644 --- a/src/Cech_complex/include/gudhi/Cech_complex_blocker.h +++ b/src/Cech_complex/include/gudhi/Cech_complex_blocker.h @@ -11,10 +11,11 @@ #ifndef CECH_COMPLEX_BLOCKER_H_ #define CECH_COMPLEX_BLOCKER_H_ -#include <gudhi/distance_functions.h> // for Gudhi::Minimal_enclosing_ball_radius +#include <CGAL/NT_converter.h> // for casting from FT to double #include <iostream> #include <vector> +#include <set> #include <cmath> // for std::sqrt namespace Gudhi { @@ -35,28 +36,104 @@ namespace cech_complex { * * \tparam Chech_complex is required by the blocker. */ -template <typename SimplicialComplexForCech, typename Cech_complex> +template <typename SimplicialComplexForCech, typename Cech_complex, typename Kernel> class Cech_blocker { private: - using Point_cloud = typename Cech_complex::Point_cloud; using Simplex_handle = typename SimplicialComplexForCech::Simplex_handle; using Filtration_value = typename SimplicialComplexForCech::Filtration_value; public: + + using Point_d = typename Kernel::Point_d; + // Numeric type of coordinates in the kernel + using FT = typename Kernel::FT; + // Sphere is a pair of point and squared radius. + using Sphere = typename std::pair<Point_d, FT>; + + template<class PointIterator> + FT get_squared_radius(PointIterator begin, PointIterator end) const { + return kernel_.compute_squared_radius_d_object()(begin, end); + } + + template<class PointIterator> + Sphere get_sphere(PointIterator begin, PointIterator end) const { + Point_d c = kernel_.construct_circumcenter_d_object()(begin, end); + FT r = kernel_.squared_distance_d_object()(c, *begin); + return std::make_pair(std::move(c), std::move(r)); + } + + /** \internal \brief Čech complex blocker operator() - the oracle - assigns the filtration value from the simplex * radius and returns if the simplex expansion must be blocked. * \param[in] sh The Simplex_handle. * \return true if the simplex radius is greater than the Cech_complex max_radius*/ bool operator()(Simplex_handle sh) { - Point_cloud points; - for (auto vertex : sc_ptr_->simplex_vertex_range(sh)) { - points.push_back(cc_ptr_->get_point(vertex)); -#ifdef DEBUG_TRACES - std::clog << "#(" << vertex << ")#"; -#endif // DEBUG_TRACES + using Point_cloud = std::vector<Point_d>; + CGAL::NT_converter<FT, double> cast_to_double; + Filtration_value radius = 0.; + + // for each face of simplex sh, test outsider point is indeed inside enclosing ball, if yes, take it and exit loop, otherwise, new sphere is circumsphere of all vertices + Sphere min_enclos_ball; + CGAL::NT_converter<double, FT> cast_to_FT; + min_enclos_ball.second = cast_to_FT(std::numeric_limits<double>::max()); + Point_cloud face_points; + for (auto face : sc_ptr_->boundary_simplex_range(sh)) { + // Find which vertex of sh is missing in face. We rely on the fact that simplex_vertex_range is sorted. + auto longlist = sc_ptr_->simplex_vertex_range(sh); + auto shortlist = sc_ptr_->simplex_vertex_range(face); + + auto longiter = std::begin(longlist); + auto shortiter = std::begin(shortlist); + auto enditer = std::end(shortlist); + while(shortiter != enditer && *longiter == *shortiter) { ++longiter; ++shortiter; } + auto extra = *longiter; // Vertex_handle + + for (auto vertex : sc_ptr_->simplex_vertex_range(face)) { + face_points.push_back(cc_ptr_->get_point(vertex)); + #ifdef DEBUG_TRACES + std::clog << "#(" << vertex << ")#"; + #endif // DEBUG_TRACES + } + Sphere sph; + auto k = sc_ptr_->key(face); + if(k != sc_ptr_->null_key()) { + sph = cc_ptr_->get_cache().at(k); + } + else { + sph = get_sphere(face_points.cbegin(), face_points.cend()); + } + face_points.clear(); + + if (kernel_.squared_distance_d_object()(sph.first, cc_ptr_->get_point(extra)) <= sph.second) { + radius = std::sqrt(cast_to_double(sph.second)); + #ifdef DEBUG_TRACES + std::clog << "circumcenter: " << sph.first << ", radius: " << radius << std::endl; + #endif // DEBUG_TRACES + if (cast_to_double(sph.second) < cast_to_double(min_enclos_ball.second)) + min_enclos_ball = sph; + } + } + // Get the minimal radius of all faces enclosing balls if exists + if(cast_to_double(min_enclos_ball.second) != std::numeric_limits<double>::max()) { + radius = std::sqrt(cast_to_double(min_enclos_ball.second)); + + sc_ptr_->assign_key(sh, cc_ptr_->get_cache().size()); + cc_ptr_->get_cache().push_back(min_enclos_ball); } - Filtration_value radius = Gudhi::Minimal_enclosing_ball_radius()(points); + + if (radius == 0.) { // Spheres of each face don't contain the whole simplex + Point_cloud points; + for (auto vertex : sc_ptr_->simplex_vertex_range(sh)) { + points.push_back(cc_ptr_->get_point(vertex)); + } + Sphere sph = get_sphere(points.cbegin(), points.cend()); + radius = std::sqrt(cast_to_double(sph.second)); + + sc_ptr_->assign_key(sh, cc_ptr_->get_cache().size()); + cc_ptr_->get_cache().push_back(sph); + } + #ifdef DEBUG_TRACES if (radius > cc_ptr_->max_radius()) std::clog << "radius > max_radius => expansion is blocked\n"; #endif // DEBUG_TRACES @@ -70,6 +147,7 @@ class Cech_blocker { private: SimplicialComplexForCech* sc_ptr_; Cech_complex* cc_ptr_; + Kernel kernel_; }; } // namespace cech_complex |