1 files changed, 65 insertions, 0 deletions
diff --git a/src/Kernels/example/kernel_basic_example.cpp b/src/Kernels/example/kernel_basic_example.cpp
new file mode 100644
index 00000000..7ecbe401
--- /dev/null
+++ b/src/Kernels/example/kernel_basic_example.cpp
@@ -0,0 +1,65 @@
+/*    This file is part of the Gudhi Library. The Gudhi library
+ *    (Geometric Understanding in Higher Dimensions) is a generic C++
+ *    library for computational topology.
+ *
+ *    Authors:       Mathieu Carrière
+ *
+ *    Copyright (C) 2017  INRIA
+ *
+ *    This program is free software: you can redistribute it and/or modify
+ *    it under the terms of the GNU General Public License as published by
+ *    the Free Software Foundation, either version 3 of the License, or
+ *    (at your option) any later version.
+ *
+ *    This program is distributed in the hope that it will be useful,
+ *    but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *    GNU General Public License for more details.
+ *
+ *    You should have received a copy of the GNU General Public License
+ *    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#include <gudhi/kernel.h>
+#include <iostream>
+#include <string>
+#include <fstream>
+#include <sstream>
+
+
+void usage(int nbArgs, char *const progName) {
+  std::cerr << "Error: Number of arguments (" << nbArgs << ") is not correct\n";
+  std::cerr << "Usage: " << progName << " PD1 PD2 \n";
+  std::cerr << "       i.e.: " << progName << " ../../../../data/persistence_diagram/PD1.pers ../../../../data/persistence_diagram/PD2.pers \n";
+  exit(-1);  // ----- >>
+}
+
+int main(int argc, char **argv) {
+
+  if (argc != 3) usage(argc, argv[0]);
+
+  double sigma = 2; double tau = 5;
+
+  std::string PDname1(argv[1]); std::string PDname2(argv[2]);
+  std::vector< std::pair<double, double> > v1, v2; std::string line; double b,d;
+
+  std::ifstream input1(PDname1);
+  while(std::getline(input1,line)){
+    std::stringstream stream(line); stream >> b; stream >> d; v1.push_back(std::pair<double,double>(b,d));
+  }
+
+  std::ifstream input2(PDname2);
+  while(std::getline(input2,line)){
+    std::stringstream stream(line); stream >> b; stream >> d; v2.push_back(std::pair<double,double>(b,d));
+  }
+
+  std::cout << "SWK exact = "    << Gudhi::kernel::sliced_wasserstein_kernel                             (v1,v2,sigma,-1)                                    << std::endl;
+  std::cout << "SWK approx = "   << Gudhi::kernel::sliced_wasserstein_kernel                             (v1,v2,sigma)                                       << std::endl;
+  std::cout << "PSSK exact = "   << Gudhi::kernel::persistence_scale_space_kernel                        (v1,v2,sigma,-1)                                    << std::endl;
+  std::cout << "PSSK approx = "  << Gudhi::kernel::persistence_scale_space_kernel                        (v1,v2,sigma)                                       << std::endl;
+  std::cout << "LPWGK exact = "  << Gudhi::kernel::linear_persistence_weighted_gaussian_kernel           (v1,v2,sigma,Gudhi::kernel::arctan_weight,-1)       << std::endl;
+  std::cout << "LPWGK approx = " << Gudhi::kernel::linear_persistence_weighted_gaussian_kernel           (v1,v2,sigma,Gudhi::kernel::arctan_weight)          << std::endl;
+  std::cout << "GPWGK exact = "  << Gudhi::kernel::gaussian_persistence_weighted_gaussian_kernel         (v1,v2,sigma,tau,Gudhi::kernel::arctan_weight,-1)   << std::endl;
+  std::cout << "GPWGK approx = " << Gudhi::kernel::gaussian_persistence_weighted_gaussian_kernel         (v1,v2,sigma,tau,Gudhi::kernel::arctan_weight)      << std::endl;
+
+}