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-rw-r--r--src/Kernels/include/gudhi/PSS.h108
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diff --git a/src/Kernels/include/gudhi/PSS.h b/src/Kernels/include/gudhi/PSS.h
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--- a/src/Kernels/include/gudhi/PSS.h
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-/* This file is part of the Gudhi Library. The Gudhi library
- * (Geometric Understanding in Higher Dimensions) is a generic C++
- * library for computational topology.
- *
- * Author(s): Mathieu Carrière
- *
- * Copyright (C) 2017 INRIA (France)
- *
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation, either version 3 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program. If not, see <http://www.gnu.org/licenses/>.
- */
-
-#ifndef PSS_H_
-#define PSS_H_
-
-#define NUMPI 3.14159265359
-
-#include <stdlib.h>
-#include <stdio.h>
-#include <cstdlib>
-#include <cstdio>
-#include <iomanip>
-
-#include <string>
-#include <iostream>
-#include <sstream>
-#include <fstream>
-
-#include <set>
-#include <map>
-#include <vector>
-#include <algorithm>
-#include <limits>
-#include <assert.h>
-
-#include <cmath>
-#include <math.h>
-
-#include <memory>
-#include <stdexcept>
-#include <omp.h>
-
-#include <gmp.h>
-#include <gmpxx.h>
-#include <random>
-#include <chrono>
-#include <ctime>
-
-#include "figtree.h"
-#include "ANN.h"
-
-using PD = std::vector<std::pair<double,double> >;
-
-namespace Gudhi {
-namespace persistence_scale_space {
-
-double compute_exact_pss(PD PD1, PD PD2, double sigma = 1){
- double k = 0;
- for(int i = 0; i < PD1.size(); i++){
- for(int j = 0; j < PD2.size(); j++){
- k += exp( -( pow(PD1[i].first - PD2[j].first, 2) + pow(PD1[i].second - PD2[j].second, 2) )/(8*sigma)) -\
- exp( -( pow(PD1[i].first - PD2[j].second, 2) + pow(PD1[i].second - PD2[j].first, 2) )/(8*sigma));
- }
- }
- return k/(8*NUMPI*sigma);
-}
-
-double compute_approximate_pss(PD PD1, PD PD2, double sigma = 1, double error = 1e-2){
-
- double k = 0;
-
- int d = 2; int N = PD1.size(); int M = PD2.size(); double h = std::sqrt(8*sigma);
- double* x = new double[2*N]; double* y = new double[2*M]; double* q = new double[N];
- for(int i = 0; i < N; i++){
- q[i] = 1.0/(8*NUMPI*sigma);
- x[2*i] = PD1[i].first; x[2*i+1] = PD1[i].second;
- }
- for(int i = 0; i < M; i++){ y[2*i] = PD2[i].first; y[2*i+1] = PD2[i].second; }
- double* g_auto = new double[M];
- memset(g_auto, 0, sizeof(double)*M);
-
- figtree(d, N, M, 1, x, h, q, y, error, g_auto);
- for(int i = 0; i < M; i++) k += g_auto[i];
-
- for(int i = 0; i < M; i++){ y[2*i] = PD2[i].second; y[2*i+1] = PD2[i].first; }
-
- figtree(d, N, M, 1, x, h, q, y, error, g_auto);
- for(int i = 0; i < M; i++) k -= g_auto[i];
-
- delete[] x; delete[] y; delete[] q; delete[] g_auto;
- return k;
-}
-
-} // namespace persistence_scale_space
-
-} // namespace Gudhi
-
-#endif // PSS_H_