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-rw-r--r--src/Nerve_GIC/example/simple_GIC.cpp65
1 files changed, 65 insertions, 0 deletions
diff --git a/src/Nerve_GIC/example/simple_GIC.cpp b/src/Nerve_GIC/example/simple_GIC.cpp
new file mode 100644
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+++ b/src/Nerve_GIC/example/simple_GIC.cpp
@@ -0,0 +1,65 @@
+#include <gudhi/GIC.h>
+
+void usage(int nbArgs, char * const progName) {
+ std::cerr << "Error: Number of arguments (" << nbArgs << ") is not correct\n";
+ std::cerr << "Usage: " << progName << " filename.off threshold function resolution gain [ouput_file.txt]\n";
+ std::cerr << " i.e.: " << progName << " ../../data/points/test.off 1.5 test_cov \n";
+ exit(-1); // ----- >>
+}
+
+int main(int argc, char **argv) {
+ if ((argc != 6) && (argc != 7)) usage(argc, (argv[0] - 1));
+
+ std::string off_file_name(argv[1]);
+ double threshold = atof(argv[2]);
+ std::string function_file_name(argv[3]);
+ double resolution = atof(argv[4]);
+ double gain = atof(argv[5]);
+
+ // Type definitions
+ using Graph_t = boost::adjacency_list < boost::vecS, boost::vecS, boost::undirectedS,\
+ boost::property < vertex_filtration_t, Filtration_value >,\
+ boost::property < edge_filtration_t, Filtration_value > >;
+
+ // ----------------------------------------------------------------------------
+ // Init of a graph induced complex from an OFF file
+ // ----------------------------------------------------------------------------
+
+ Gudhi::graph_induced_complex::Graph_induced_complex GIC;
+ GIC.set_graph_from_rips(threshold, off_file_name);
+ GIC.set_cover_from_function(function_file_name,resolution,gain,0);
+ //GIC.find_GIC_simplices();
+ GIC.find_GIC_simplices_with_functional_minimal_cover(resolution,gain);
+ Simplex_tree stree; GIC.create_complex(stree);
+
+ std::streambuf* streambufffer;
+ std::ofstream ouput_file_stream;
+
+ if (argc == 7) {
+ ouput_file_stream.open(std::string(argv[4]));
+ streambufffer = ouput_file_stream.rdbuf();
+ } else {
+ streambufffer = std::cout.rdbuf();
+ }
+
+ std::ostream output_stream(streambufffer);
+
+ // ----------------------------------------------------------------------------
+ // Display information about the graph induced complex
+ // ----------------------------------------------------------------------------
+ output_stream << "Graph induced complex is of dimension " << stree.dimension() <<
+ " - " << stree.num_simplices() << " simplices - " <<
+ stree.num_vertices() << " vertices." << std::endl;
+
+ output_stream << "Iterator on graph induced complex simplices" << std::endl;
+ for (auto f_simplex : stree.filtration_simplex_range()) {
+ for (auto vertex : stree.simplex_vertex_range(f_simplex)) {
+ output_stream << vertex << " ";
+ }
+ output_stream << std::endl;
+ }
+
+ ouput_file_stream.close();
+
+ return 0;
+}