summaryrefslogtreecommitdiff
path: root/src/Persistence_representations/example/persistence_heat_maps.cpp
diff options
context:
space:
mode:
Diffstat (limited to 'src/Persistence_representations/example/persistence_heat_maps.cpp')
-rw-r--r--src/Persistence_representations/example/persistence_heat_maps.cpp25
1 files changed, 23 insertions, 2 deletions
diff --git a/src/Persistence_representations/example/persistence_heat_maps.cpp b/src/Persistence_representations/example/persistence_heat_maps.cpp
index 323b57e9..45208b68 100644
--- a/src/Persistence_representations/example/persistence_heat_maps.cpp
+++ b/src/Persistence_representations/example/persistence_heat_maps.cpp
@@ -2,9 +2,12 @@
* (Geometric Understanding in Higher Dimensions) is a generic C++
* library for computational topology.
*
- * Author(s): Pawel Dlotko
+ * Author(s): Pawel Dlotko and Mathieu Carriere
*
- * Copyright (C) 2016 Inria
+ * Copyright (C) 2019 Inria
+ *
+ * Modifications:
+ * - 2018/04 MC: Add persistence heat maps computation
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
@@ -21,10 +24,20 @@
*/
#include <gudhi/Persistence_heat_maps.h>
+#include <gudhi/common_persistence_representations.h>
#include <iostream>
#include <vector>
#include <utility>
+#include <functional>
+#include <cmath>
+
+std::function<double(std::pair<double, double>, std::pair<double, double>)> Gaussian_function(double sigma) {
+ return [=](std::pair<double, double> p, std::pair<double, double> q) {
+ return std::exp(-((p.first - q.first) * (p.first - q.first) + (p.second - q.second) * (p.second - q.second)) /
+ (sigma));
+ };
+}
using constant_scaling_function = Gudhi::Persistence_representations::constant_scaling_function;
using Persistence_heat_maps = Gudhi::Persistence_representations::Persistence_heat_maps<constant_scaling_function>;
@@ -76,5 +89,13 @@ int main(int argc, char** argv) {
// to compute scalar product of hm1 and hm2:
std::cout << "Scalar product is : " << hm1.compute_scalar_product(hm2) << std::endl;
+ Persistence_heat_maps hm1k(persistence1, Gaussian_function(1.0));
+ Persistence_heat_maps hm2k(persistence2, Gaussian_function(1.0));
+ Persistence_heat_maps hm1i(persistence1, Gaussian_function(1.0), 20, 20, 0, 11, 0, 11);
+ Persistence_heat_maps hm2i(persistence2, Gaussian_function(1.0), 20, 20, 0, 11, 0, 11);
+ std::cout << "Scalar product computed with exact 2D kernel on grid is : " << hm1i.compute_scalar_product(hm2i)
+ << std::endl;
+ std::cout << "Scalar product computed with exact 2D kernel is : " << hm1k.compute_scalar_product(hm2k) << std::endl;
+
return 0;
}