diff options
Diffstat (limited to 'src/Persistent_cohomology/include/gudhi')
4 files changed, 29 insertions, 32 deletions
diff --git a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h index 5f399f1a..d096792f 100644 --- a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h +++ b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h @@ -20,8 +20,8 @@ * along with this program. If not, see <http://www.gnu.org/licenses/>. */ -#ifndef SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_H_ -#define SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_H_ +#ifndef PERSISTENT_COHOMOLOGY_H_ +#define PERSISTENT_COHOMOLOGY_H_ #include <gudhi/Persistent_cohomology/Persistent_cohomology_column.h> #include <gudhi/Persistent_cohomology/Field_Zp.h> @@ -38,6 +38,10 @@ #include <vector> #include <set> #include <fstream> // std::ofstream +#include <limits> // for numeric_limits<> +#include <tuple> +#include <algorithm> +#include <string> namespace Gudhi { @@ -524,8 +528,8 @@ class Persistent_cohomology { Arith_element charac) { Simplex_key key = cpx_->key(sigma); // Create a column containing only one cell, - Column * new_col = column_pool_.construct(Column(key)); - Cell * new_cell = cell_pool_.construct(Cell(key, x, new_col)); + Column * new_col = column_pool_.construct(key); + Cell * new_cell = cell_pool_.construct(key, x, new_col); new_col->col_.push_back(*new_cell); // and insert it in the matrix, in constant time thanks to the hint cam_.end(). // Indeed *new_col has the biggest lexicographic value because key is the @@ -709,13 +713,11 @@ class Persistent_cohomology { } } - void write_output_diagram(std::string diagram_name) - { - std::ofstream diagram_out(diagram_name.c_str()); - cmp_intervals_by_length cmp( cpx_ ); + void write_output_diagram(std::string diagram_name) { + std::ofstream diagram_out(diagram_name.c_str()); + cmp_intervals_by_length cmp(cpx_); std::sort(std::begin(persistent_pairs_), std::end(persistent_pairs_), cmp); - for(auto pair : persistent_pairs_) - { + for (auto pair : persistent_pairs_) { diagram_out << cpx_->dimension(get<0>(pair)) << " " << cpx_->filtration(get<0>(pair)) << " " << cpx_->filtration(get<1>(pair)) << std::endl; @@ -774,4 +776,4 @@ class Persistent_cohomology { } // namespace Gudhi -#endif // SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_H_ +#endif // PERSISTENT_COHOMOLOGY_H_ diff --git a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h index a12019f8..6db16e69 100644 --- a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h +++ b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h @@ -20,8 +20,8 @@ * along with this program. If not, see <http://www.gnu.org/licenses/>. */ -#ifndef SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_FIELD_ZP_H_ -#define SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_FIELD_ZP_H_ +#ifndef PERSISTENT_COHOMOLOGY_FIELD_ZP_H_ +#define PERSISTENT_COHOMOLOGY_FIELD_ZP_H_ #include <utility> #include <vector> @@ -113,4 +113,4 @@ class Field_Zp { } // namespace Gudhi -#endif // SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_FIELD_ZP_H_ +#endif // PERSISTENT_COHOMOLOGY_FIELD_ZP_H_ diff --git a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h index 555d696f..0591fc95 100644 --- a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h +++ b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h @@ -20,8 +20,8 @@ * along with this program. If not, see <http://www.gnu.org/licenses/>. */ -#ifndef SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_MULTI_FIELD_H_ -#define SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_MULTI_FIELD_H_ +#ifndef PERSISTENT_COHOMOLOGY_MULTI_FIELD_H_ +#define PERSISTENT_COHOMOLOGY_MULTI_FIELD_H_ #include <gmpxx.h> @@ -183,4 +183,4 @@ class Multi_field { } // namespace Gudhi -#endif // SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_MULTI_FIELD_H_ +#endif // PERSISTENT_COHOMOLOGY_MULTI_FIELD_H_ diff --git a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Persistent_cohomology_column.h b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Persistent_cohomology_column.h index 5ffd1776..612658e6 100644 --- a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +++ b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Persistent_cohomology_column.h @@ -20,14 +20,14 @@ * along with this program. If not, see <http://www.gnu.org/licenses/>. */ -#ifndef SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_PERSISTENT_COHOMOLOGY_COLUMN_H_ -#define SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_PERSISTENT_COHOMOLOGY_COLUMN_H_ +#ifndef PERSISTENT_COHOMOLOGY_PERSISTENT_COHOMOLOGY_COLUMN_H_ +#define PERSISTENT_COHOMOLOGY_PERSISTENT_COHOMOLOGY_COLUMN_H_ -#include <list> +#include <boost/tuple/tuple.hpp> +#include <boost/intrusive/set.hpp> +#include <boost/intrusive/list.hpp> -#include "boost/tuple/tuple.hpp" -#include "boost/intrusive/set.hpp" -#include "boost/intrusive/list.hpp" +#include <list> namespace Gudhi { @@ -80,13 +80,15 @@ class Persistent_cohomology_cell : public base_hook_cam_h, * The non-zero coefficients of the column are stored in a * boost::intrusive::list. Contains a hook to be stored in a * boost::intrusive::set. + * + * Movable but not Copyable. */ template<typename SimplexKey, typename ArithmeticElement> class Persistent_cohomology_column : public boost::intrusive::set_base_hook< boost::intrusive::link_mode<boost::intrusive::normal_link> > { - private: template<class T1, class T2> friend class Persistent_cohomology; + public: typedef Persistent_cohomology_cell<SimplexKey, ArithmeticElement> Cell; typedef boost::intrusive::list<Cell, boost::intrusive::constant_time_size<false>, @@ -96,13 +98,6 @@ class Persistent_cohomology_column : public boost::intrusive::set_base_hook< explicit Persistent_cohomology_column(SimplexKey key) : col_(), class_key_(key) {} - public: - /** Copy constructor.*/ - Persistent_cohomology_column(Persistent_cohomology_column const &other) - : col_(), - class_key_(other.class_key_) { - assert(other.col_.empty()); - } /** \brief Returns true iff the column is null.*/ bool is_null() const { @@ -143,4 +138,4 @@ class Persistent_cohomology_column : public boost::intrusive::set_base_hook< } // namespace Gudhi -#endif // SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_PERSISTENT_COHOMOLOGY_COLUMN_H_ +#endif // PERSISTENT_COHOMOLOGY_PERSISTENT_COHOMOLOGY_COLUMN_H_ |