diff options
Diffstat (limited to 'src/Rips_complex/example/example_rips_complex_from_fvecs.cpp')
-rw-r--r-- | src/Rips_complex/example/example_rips_complex_from_fvecs.cpp | 71 |
1 files changed, 31 insertions, 40 deletions
diff --git a/src/Rips_complex/example/example_rips_complex_from_fvecs.cpp b/src/Rips_complex/example/example_rips_complex_from_fvecs.cpp index c05d038a..5e7667bd 100644 --- a/src/Rips_complex/example/example_rips_complex_from_fvecs.cpp +++ b/src/Rips_complex/example/example_rips_complex_from_fvecs.cpp @@ -10,58 +10,49 @@ #include <iostream> #include <string> #include <vector> +#include <ctime> void usage(int nbArgs, char * const progName) { - std::cerr << "Error: Number of arguments (" << nbArgs << ") is not correct\n"; - std::cerr << "Usage: " << progName << " filename.fvecs threshold dim_max [ouput_file.txt]\n"; - std::cerr << " i.e.: " << progName << " ../../data/points/alphacomplexdoc.fvecs 60.0\n"; - exit(-1); // ----- >> + std::cerr << "Error: Number of arguments (" << nbArgs << ") is not correct\n"; + std::cerr << "Usage: " << progName << " filename.fvecs threshold dim_max [ouput_file.txt]\n"; + std::cerr << " i.e.: " << progName << " ../../data/points/alphacomplexdoc.fvecs 60.0\n"; + exit(-1); // ----- >> } int main(int argc, char **argv) { - if ((argc != 4) && (argc != 5)) usage(argc, (argv[0] - 1)); + if (argc != 4) usage(argc, (argv[0] - 1)); - std::string file_name(argv[1]); - double threshold = atof(argv[2]); - int dim_max = atoi(argv[3]); + std::string file_name(argv[1]); + double threshold = atof(argv[2]); + int dim_max = atoi(argv[3]); - // Type definitions - using K = CGAL::Epick_d<CGAL::Dynamic_dimension_tag>; - using Point = typename K::Point_d; - //using Simplex_tree = Gudhi::Simplex_tree<>; - using Simplex_tree = Gudhi::Fake_simplex_tree; - using Filtration_value = Simplex_tree::Filtration_value; - using Rips_complex = Gudhi::rips_complex::Rips_complex<Filtration_value>; - using Point_vector = std::vector<Point>; + // Type definitions + using K = CGAL::Epick_d<CGAL::Dynamic_dimension_tag>; + using Point = typename K::Point_d; + //using Simplex_tree = Gudhi::Simplex_tree<>; + using Simplex_tree = Gudhi::Fake_simplex_tree; + using Filtration_value = Simplex_tree::Filtration_value; + using Rips_complex = Gudhi::rips_complex::Rips_complex<Filtration_value>; + using Point_vector = std::vector<Point>; - // ---------------------------------------------------------------------------- - // Init of a Rips complex from an fvecs file - // ---------------------------------------------------------------------------- - Point_vector point_vector; - Gudhi::load_points_from_fvecs_file<K>(file_name, std::back_insert_iterator< Point_vector >(point_vector)); + // ---------------------------------------------------------------------------- + // Init of a Rips complex from an fvecs file + // ---------------------------------------------------------------------------- + Point_vector point_vector; + Gudhi::load_points_from_fvecs_file<K>(file_name, std::back_insert_iterator< Point_vector >(point_vector)); - Rips_complex rips_complex_from_file(point_vector, threshold, Gudhi::Euclidean_distance()); + Rips_complex rips_complex_from_file(point_vector, threshold, Gudhi::Euclidean_distance()); - std::streambuf* streambufffer; - std::ofstream ouput_file_stream; - if (argc == 5) { - ouput_file_stream.open(std::string(argv[4])); - streambufffer = ouput_file_stream.rdbuf(); - } else { - streambufffer = std::cout.rdbuf(); - } + Simplex_tree stree; - Simplex_tree stree; - rips_complex_from_file.create_complex(stree, dim_max); - std::ostream output_stream(streambufffer); + clock_t start, end; + start = clock(); + rips_complex_from_file.create_complex(stree, dim_max); + end = clock(); - // ---------------------------------------------------------------------------- - // Display information about the Rips complex - // ---------------------------------------------------------------------------- - output_stream << "Rips complex is of dimension " << stree.dimension() << - " - " << stree.num_simplices() << " simplices." << std::endl; + std::cout << "Strong witness complex took "<< static_cast<double>(end - start) / CLOCKS_PER_SEC << " s." << std::endl; + std::cout << "Rips complex is of dimension " << stree.dimension() << " - " << stree.num_simplices() << " simplices." << std::endl; - ouput_file_stream.close(); - return 0; + return 0; } |