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-rw-r--r--src/cmake/modules/FindTBB.cmake6
-rw-r--r--src/cmake/modules/GUDHI_doxygen_target.cmake6
-rw-r--r--src/cmake/modules/GUDHI_modules.cmake4
-rw-r--r--src/cmake/modules/GUDHI_options.cmake20
-rw-r--r--src/cmake/modules/GUDHI_submodules.cmake5
-rw-r--r--src/cmake/modules/GUDHI_third_party_libraries.cmake8
-rw-r--r--src/cmake/modules/GUDHI_user_version_target.cmake2
7 files changed, 32 insertions, 19 deletions
diff --git a/src/cmake/modules/FindTBB.cmake b/src/cmake/modules/FindTBB.cmake
index 13f4d929..e6c42dc7 100644
--- a/src/cmake/modules/FindTBB.cmake
+++ b/src/cmake/modules/FindTBB.cmake
@@ -34,7 +34,7 @@
#
# GvdB: Mac OS X distribution places libraries directly in lib directory.
#
-# For backwards compatibility, you may explicitely set the CMake variables TBB_ARCHITECTURE and TBB_COMPILER.
+# For backwards compatibility, you may explicitly set the CMake variables TBB_ARCHITECTURE and TBB_COMPILER.
# TBB_ARCHITECTURE [ ia32 | em64t | itanium ]
# which architecture to use
# TBB_COMPILER e.g. vc9 or cc3.2.3_libc2.3.2_kernel2.4.21 or cc4.0.1_os10.4.9
@@ -54,8 +54,8 @@
# TBB_MALLOC_DEBUG_LIBRARY, the TBB debug malloc library
# TBB_FOUND, If false, don't try to use TBB.
# TBB_INTERFACE_VERSION, as defined in tbb/tbb_stddef.h
-# TBB_MALLOCPROXY_DEBUG_LIBRARY, the TBB debug malloc_proxy library (not included in TBB_LIBRARIES since it's optionnal)
-# TBB_MALLOCPROXY_RELEASE_LIBRARY, the TBB release malloc_proxy library (not included in TBB_LIBRARIES since it's optionnal)
+# TBB_MALLOCPROXY_DEBUG_LIBRARY, the TBB debug malloc_proxy library (not included in TBB_LIBRARIES since it's optional)
+# TBB_MALLOCPROXY_RELEASE_LIBRARY, the TBB release malloc_proxy library (not included in TBB_LIBRARIES since it's optional)
include(CheckCXXSourceCompiles)
diff --git a/src/cmake/modules/GUDHI_doxygen_target.cmake b/src/cmake/modules/GUDHI_doxygen_target.cmake
index 6b9514de..327513da 100644
--- a/src/cmake/modules/GUDHI_doxygen_target.cmake
+++ b/src/cmake/modules/GUDHI_doxygen_target.cmake
@@ -45,6 +45,11 @@ if(DOXYGEN_FOUND)
endif()
message("++ Doxygen version ${DOXYGEN_VERSION}")
+ if (DOXYGEN_VERSION VERSION_LESS 1.9.3)
+ set(GUDHI_DOXYGEN_CLASS_DIAGRAMS "CLASS_DIAGRAMS = NO")
+ else()
+ set(GUDHI_DOXYGEN_CLASS_DIAGRAMS "")
+ endif()
if (DOXYGEN_VERSION VERSION_LESS 1.9.2)
set(GUDHI_DOXYGEN_MATHJAX_VERSION "MATHJAX_VERSION = MathJax_2")
set(GUDHI_DOXYGEN_MATHJAX_EXTENSIONS "TeX/AMSmath TeX/AMSsymbols")
@@ -52,6 +57,7 @@ if(DOXYGEN_FOUND)
set(GUDHI_DOXYGEN_MATHJAX_VERSION "MATHJAX_VERSION = MathJax_3")
set(GUDHI_DOXYGEN_MATHJAX_EXTENSIONS "ams")
endif()
+
configure_file(${GUDHI_DOXYGEN_SOURCE_PREFIX}/Doxyfile.in "${CMAKE_CURRENT_BINARY_DIR}/Doxyfile" @ONLY)
add_custom_target(doxygen ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile
diff --git a/src/cmake/modules/GUDHI_modules.cmake b/src/cmake/modules/GUDHI_modules.cmake
index 13248f7e..ec1f756b 100644
--- a/src/cmake/modules/GUDHI_modules.cmake
+++ b/src/cmake/modules/GUDHI_modules.cmake
@@ -2,7 +2,7 @@
set(GUDHI_MODULES_FULL_LIST "")
function(add_gudhi_module file_path)
- option("WITH_MODULE_GUDHI_${file_path}" "Activate/desactivate ${file_path} compilation and installation" ON)
+ option("WITH_MODULE_GUDHI_${file_path}" "Activate/deactivate ${file_path} compilation and installation" ON)
if (WITH_MODULE_GUDHI_${file_path})
set(GUDHI_MODULES ${GUDHI_MODULES} ${file_path} CACHE INTERNAL "GUDHI_MODULES")
else()
@@ -10,7 +10,7 @@ function(add_gudhi_module file_path)
endif()
# Required by user_version
set(GUDHI_MODULES_FULL_LIST ${GUDHI_MODULES_FULL_LIST} ${file_path} PARENT_SCOPE)
- # Include module headers is independant - You may ask for no Alpha complex module but Python interface i.e.
+ # Include module headers is independent - You may ask for no Alpha complex module but Python interface i.e.
if(IS_DIRECTORY ${CMAKE_SOURCE_DIR}/src/${file_path}/include/)
include_directories(src/${file_path}/include/)
endif()
diff --git a/src/cmake/modules/GUDHI_options.cmake b/src/cmake/modules/GUDHI_options.cmake
index 3cd0a489..5e28c87d 100644
--- a/src/cmake/modules/GUDHI_options.cmake
+++ b/src/cmake/modules/GUDHI_options.cmake
@@ -1,5 +1,15 @@
-option(WITH_GUDHI_BENCHMARK "Activate/desactivate benchmark compilation" OFF)
-option(WITH_GUDHI_EXAMPLE "Activate/desactivate examples compilation and installation" OFF)
-option(WITH_GUDHI_PYTHON "Activate/desactivate python module compilation and installation" ON)
-option(WITH_GUDHI_TEST "Activate/desactivate examples compilation and installation" ON)
-option(WITH_GUDHI_UTILITIES "Activate/desactivate utilities compilation and installation" ON)
+option(WITH_GUDHI_BENCHMARK "Activate/deactivate benchmark compilation" OFF)
+option(WITH_GUDHI_EXAMPLE "Activate/deactivate examples compilation and installation" OFF)
+option(WITH_GUDHI_REMOTE_TEST "Activate/deactivate datasets fetching test which uses the Internet" OFF)
+option(WITH_GUDHI_PYTHON "Activate/deactivate python module compilation and installation" ON)
+option(WITH_GUDHI_TEST "Activate/deactivate examples compilation and installation" ON)
+option(WITH_GUDHI_UTILITIES "Activate/deactivate utilities compilation and installation" ON)
+option(WITH_GUDHI_THIRD_PARTY "Activate/deactivate third party libraries cmake detection. When set to OFF, it is usefull for doxygen or user_version i.e." ON)
+
+if (NOT WITH_GUDHI_THIRD_PARTY)
+ set (WITH_GUDHI_BENCHMARK OFF)
+ set (WITH_GUDHI_EXAMPLE OFF)
+ set (WITH_GUDHI_PYTHON OFF)
+ set (WITH_GUDHI_TEST OFF)
+ set (WITH_GUDHI_UTILITIES OFF)
+endif() \ No newline at end of file
diff --git a/src/cmake/modules/GUDHI_submodules.cmake b/src/cmake/modules/GUDHI_submodules.cmake
new file mode 100644
index 00000000..78b045bd
--- /dev/null
+++ b/src/cmake/modules/GUDHI_submodules.cmake
@@ -0,0 +1,5 @@
+# For those who dislike bundled dependencies, this indicates where to find a preinstalled Hera.
+set(HERA_WASSERSTEIN_INTERNAL_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/wasserstein/include)
+set(HERA_WASSERSTEIN_INCLUDE_DIR ${HERA_WASSERSTEIN_INTERNAL_INCLUDE_DIR} CACHE PATH "Directory where one can find Hera's wasserstein.h")
+set(HERA_BOTTLENECK_INTERNAL_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/bottleneck/include)
+set(HERA_BOTTLENECK_INCLUDE_DIR ${HERA_BOTTLENECK_INTERNAL_INCLUDE_DIR} CACHE PATH "Directory where one can find Hera's bottleneck.h") \ No newline at end of file
diff --git a/src/cmake/modules/GUDHI_third_party_libraries.cmake b/src/cmake/modules/GUDHI_third_party_libraries.cmake
index 6a94d1f5..2cf6787e 100644
--- a/src/cmake/modules/GUDHI_third_party_libraries.cmake
+++ b/src/cmake/modules/GUDHI_third_party_libraries.cmake
@@ -48,12 +48,6 @@ if(CGAL_FOUND)
include( ${CGAL_USE_FILE} )
endif()
-# For those who dislike bundled dependencies, this indicates where to find a preinstalled Hera.
-set(HERA_WASSERSTEIN_INTERNAL_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/wasserstein/include)
-set(HERA_WASSERSTEIN_INCLUDE_DIR ${HERA_WASSERSTEIN_INTERNAL_INCLUDE_DIR} CACHE PATH "Directory where one can find Hera's wasserstein.h")
-set(HERA_BOTTLENECK_INTERNAL_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/bottleneck/include)
-set(HERA_BOTTLENECK_INCLUDE_DIR ${HERA_BOTTLENECK_INTERNAL_INCLUDE_DIR} CACHE PATH "Directory where one can find Hera's bottleneck.h")
-
option(WITH_GUDHI_USE_TBB "Build with Intel TBB parallelization" ON)
# Find TBB package for parallel sort - not mandatory, just optional.
@@ -174,7 +168,7 @@ if (WITH_GUDHI_PYTHON)
message(FATAL_ERROR "ERROR: GUDHI_PYTHON_PATH is not valid.")
endif(NOT GUDHI_PYTHON_PATH)
- option(WITH_GUDHI_PYTHON_RUNTIME_LIBRARY_DIRS "Build with setting runtime_library_dirs. Usefull when setting rpath is not allowed" ON)
+ option(WITH_GUDHI_PYTHON_RUNTIME_LIBRARY_DIRS "Build with setting runtime_library_dirs. Useful when setting rpath is not allowed" ON)
if(PYTHONINTERP_FOUND AND CYTHON_FOUND)
if(SPHINX_FOUND)
diff --git a/src/cmake/modules/GUDHI_user_version_target.cmake b/src/cmake/modules/GUDHI_user_version_target.cmake
index 9e76c3d9..4487ad86 100644
--- a/src/cmake/modules/GUDHI_user_version_target.cmake
+++ b/src/cmake/modules/GUDHI_user_version_target.cmake
@@ -14,8 +14,6 @@ add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
make_directory ${GUDHI_USER_VERSION_DIR}
COMMENT "user_version creation in ${GUDHI_USER_VERSION_DIR}")
-file(COPY "${CMAKE_SOURCE_DIR}/src/Doxyfile.in" DESTINATION "${CMAKE_CURRENT_BINARY_DIR}/")
-
# Generate bib files for Doxygen - cf. root CMakeLists.txt for explanation
string(TIMESTAMP GUDHI_VERSION_YEAR "%Y")
configure_file(${CMAKE_SOURCE_DIR}/biblio/how_to_cite_gudhi.bib.in "${CMAKE_CURRENT_BINARY_DIR}/biblio/how_to_cite_gudhi.bib" @ONLY)