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-rw-r--r--src/common/doc/examples.h1
-rw-r--r--src/common/doc/footer.html13
-rw-r--r--src/common/doc/header.html12
-rw-r--r--src/common/doc/installation.h2
-rw-r--r--src/common/doc/main_page.md4
-rwxr-xr-x[-rw-r--r--]src/common/doc/stylesheet.css1371
-rw-r--r--src/common/include/gudhi/distance_functions.h49
7 files changed, 35 insertions, 1417 deletions
diff --git a/src/common/doc/examples.h b/src/common/doc/examples.h
index 556a24f1..1634b19e 100644
--- a/src/common/doc/examples.h
+++ b/src/common/doc/examples.h
@@ -40,7 +40,6 @@
* @example edge_collapse_basic_example.cpp
* \section Cech_complex_example_section Cech_complex
* @example cech_persistence.cpp
- * @example cech_complex_step_by_step.cpp
* @example cech_complex_example_from_points.cpp
* \section Bitmap_cubical_complex_example_section Bitmap_cubical_complex
* @example periodic_cubical_complex_persistence.cpp
diff --git a/src/common/doc/footer.html b/src/common/doc/footer.html
index 4168c6bc..08a2cbd0 100644
--- a/src/common/doc/footer.html
+++ b/src/common/doc/footer.html
@@ -1,5 +1,9 @@
-<!-- HTML footer for doxygen 1.8.6-->
+<!-- HTML footer for doxygen 1.9.4-->
<!-- start footer part -->
+<!--BEGIN GENERATE_TREEVIEW-->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+<!--END GENERATE_TREEVIEW-->
+<ul>
<table style="width:100%">
<tr class="no-bullet shadow-black">
<td class="network-entypo">
@@ -10,14 +14,15 @@
<!--END PROJECT_NAME-->
</td>
<td class="network-entypo">
-<!--BEGIN GENERATE_TREEVIEW-->
$generatedby
<a href="http://www.doxygen.org/index.html">
Doxygen</a> $doxygenversion
-<!--END GENERATE_TREEVIEW-->
</td>
</tr>
</table>
-
+</ul>
+<!--BEGIN GENERATE_TREEVIEW-->
+</div>
+<!--END GENERATE_TREEVIEW-->
</body>
</html>
diff --git a/src/common/doc/header.html b/src/common/doc/header.html
index 7c20478b..a97e1b2f 100644
--- a/src/common/doc/header.html
+++ b/src/common/doc/header.html
@@ -8,9 +8,6 @@
<meta name="generator" content="Doxygen $doxygenversion"/>
<!--BEGIN PROJECT_NAME--><title>$projectname: $title</title><!--END PROJECT_NAME-->
<!--BEGIN !PROJECT_NAME--><title>$title</title><!--END !PROJECT_NAME-->
-<!-- GUDHI website css for header BEGIN -->
-<link rel="stylesheet" type="text/css" href="https://gudhi.inria.fr/assets/css/styles_feeling_responsive.css" />
-<!-- GUDHI website css for header END -->
<link href="$relpath^tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="$relpath^jquery.js"></script>
<script type="text/javascript" src="$relpath^dynsections.js"></script>
@@ -18,13 +15,17 @@ $treeview
$search
$mathjax
<link href="$relpath^$stylesheet" rel="stylesheet" type="text/css" />
+<!-- GUDHI website css for header BEGIN -->
+<link rel="stylesheet" type="text/css" href="https://gudhi.inria.fr/assets/css/styles_feeling_responsive.css" />
+<!-- GUDHI website css for header END -->
$extrastylesheet
</head>
<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<!-- GUDHI website header BEGIN -->
<div id="navigation" class="sticky">
- <nav class="top-bar" role="navigation" data-topbar>
+ <nav class="top-bar" role="navigation" data-topbar="true">
<ul class="title-area">
<li class="name">
<h1 class="show-for-small-only"><a href="" class="icon-tree"> GUDHI library</a></h1>
@@ -38,7 +39,7 @@ $extrastylesheet
<li><a href="/contact/">Contact</a></li>
</ul>
<ul class="left">
- <li><a href="/"> <img src="/assets/img/home.png" alt=" GUDHI"> GUDHI </a></li>
+ <li><a href="/"> <img src="/assets/img/home.png" alt=" GUDHI"/> GUDHI </a></li>
<li class="divider"></li>
<li class="has-dropdown">
<a href="#">Project</a>
@@ -85,7 +86,6 @@ $extrastylesheet
</div><!-- /#navigation -->
<!-- GUDHI website header END -->
-<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<!--BEGIN TITLEAREA-->
<div id="titlearea">
diff --git a/src/common/doc/installation.h b/src/common/doc/installation.h
index c17855b6..28526498 100644
--- a/src/common/doc/installation.h
+++ b/src/common/doc/installation.h
@@ -40,6 +40,8 @@ make \endverbatim
* `make test` is using <a href="https://cmake.org/cmake/help/latest/manual/ctest.1.html">Ctest</a> (CMake test driver
* program). If some of the tests are failing, please send us the result of the following command:
* \verbatim ctest --output-on-failure \endverbatim
+ * Testing fetching datasets feature requires the use of the internet and is disabled by default. If you want to include this test, set WITH_GUDHI_REMOTE_TEST to ON when building in the previous step (note that this test is included in the python module):
+ * \verbatim cmake -DCMAKE_BUILD_TYPE=Release -DWITH_GUDHI_TEST=ON -DWITH_GUDHI_REMOTE_TEST=ON --DWITH_GUDHI_PYTHON=ON .. \endverbatim
*
* \subsection documentationgeneration C++ documentation
* To generate the C++ documentation, the <a target="_blank" href="http://www.doxygen.org/">doxygen</a> program
diff --git a/src/common/doc/main_page.md b/src/common/doc/main_page.md
index 4f2f1692..ce903405 100644
--- a/src/common/doc/main_page.md
+++ b/src/common/doc/main_page.md
@@ -180,8 +180,8 @@
<td width="15%">
<b>Author:</b> Vincent Rouvreau<br>
<b>Introduced in:</b> GUDHI 2.2.0<br>
- <b>Copyright:</b> MIT [(GPL v3)](../../licensing/)<br>
- <b>Includes:</b> [Miniball](https://people.inf.ethz.ch/gaertner/subdir/software/miniball.html)<br>
+ <b>Copyright:</b> MIT [(LGPL v3)](../../licensing/)<br>
+ <b>Requires:</b> \ref cgal
</td>
</tr>
<tr>
diff --git a/src/common/doc/stylesheet.css b/src/common/doc/stylesheet.css
index 1df177a4..fb030e1f 100644..100755
--- a/src/common/doc/stylesheet.css
+++ b/src/common/doc/stylesheet.css
@@ -1,1367 +1,28 @@
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+// With the doxygen versions <= 1.9.2 the default setting 'overflow: hidden;' causes problems.
+// With the commit:
+// Commit: 590198b416cd53313d150428d2f912586065ea0d [590198b]
+// Date: Wednesday, December 1, 2021 1:37:26 PM
+// issue #8924 Horizontal scroll bar missing in HTML for wide class="dotgraph" objects
+// for the doxygen 1.9.3 version this has already been corrected but to run properly with the <= 1.9.2 version
+// this setting is required
+ul {
+ overflow: visible;
}
-
diff --git a/src/common/include/gudhi/distance_functions.h b/src/common/include/gudhi/distance_functions.h
index 9bbc62b7..5e5a1e31 100644
--- a/src/common/include/gudhi/distance_functions.h
+++ b/src/common/include/gudhi/distance_functions.h
@@ -13,8 +13,6 @@
#include <gudhi/Debug_utils.h>
-#include <gudhi/Miniball.hpp>
-
#include <boost/range/metafunctions.hpp>
#include <boost/range/size.hpp>
@@ -59,53 +57,6 @@ class Euclidean_distance {
}
};
-/** @brief Compute the radius of the minimal enclosing ball between Points given by a range of coordinates.
- * The points are assumed to have the same dimension. */
-class Minimal_enclosing_ball_radius {
- public:
- /** \brief Minimal_enclosing_ball_radius from two points.
- *
- * @param[in] point_1 First point.
- * @param[in] point_2 second point.
- * @return The minimal enclosing ball radius for the two points (aka. Euclidean distance / 2.).
- *
- * \tparam Point must be a range of Cartesian coordinates.
- *
- */
- template< typename Point >
- typename std::iterator_traits<typename boost::range_iterator<Point>::type>::value_type
- operator()(const Point& point_1, const Point& point_2) const {
- return Euclidean_distance()(point_1, point_2) / 2.;
- }
- /** \brief Minimal_enclosing_ball_radius from a point cloud.
- *
- * @param[in] point_cloud The points.
- * @return The minimal enclosing ball radius for the points.
- *
- * \tparam Point_cloud must be a range of points with Cartesian coordinates.
- * Point_cloud is a range over a range of Coordinate.
- *
- */
- template< typename Point_cloud,
- typename Point_iterator = typename boost::range_const_iterator<Point_cloud>::type,
- typename Point = typename std::iterator_traits<Point_iterator>::value_type,
- typename Coordinate_iterator = typename boost::range_const_iterator<Point>::type,
- typename Coordinate = typename std::iterator_traits<Coordinate_iterator>::value_type>
- Coordinate
- operator()(const Point_cloud& point_cloud) const {
- using Min_sphere = Miniball::Miniball<Miniball::CoordAccessor<Point_iterator, Coordinate_iterator>>;
-
- Min_sphere ms(boost::size(*point_cloud.begin()), point_cloud.begin(), point_cloud.end());
-#ifdef DEBUG_TRACES
- std::clog << "Minimal_enclosing_ball_radius = " << std::sqrt(ms.squared_radius()) << " | nb points = "
- << boost::size(point_cloud) << " | dimension = "
- << boost::size(*point_cloud.begin()) << std::endl;
-#endif // DEBUG_TRACES
-
- return std::sqrt(ms.squared_radius());
- }
-};
-
} // namespace Gudhi
#endif // DISTANCE_FUNCTIONS_H_
generated by cgit v1.2.3 (git 2.39.1) at 2024-06-29 11:28:47 +0000