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-rw-r--r--src/cython/gudhi/simplex_tree.pxd10
-rw-r--r--src/cython/gudhi/simplex_tree.pyx11
2 files changed, 11 insertions, 10 deletions
diff --git a/src/cython/gudhi/simplex_tree.pxd b/src/cython/gudhi/simplex_tree.pxd
index 25051295..5f86cfe2 100644
--- a/src/cython/gudhi/simplex_tree.pxd
+++ b/src/cython/gudhi/simplex_tree.pxd
@@ -44,3 +44,13 @@ cdef extern from "Simplex_tree_interface.h" namespace "Gudhi":
void remove_maximal_simplex(vector[int] simplex)
bool prune_above_filtration(double filtration)
bool make_filtration_non_decreasing()
+
+cdef extern from "Persistent_cohomology_interface.h" namespace "Gudhi":
+ cdef cppclass Simplex_tree_persistence_interface "Gudhi::Persistent_cohomology_interface<Gudhi::Simplex_tree<Gudhi::Simplex_tree_options_full_featured>>":
+ Simplex_tree_persistence_interface(Simplex_tree_interface_full_featured * st, bool persistence_dim_max)
+ vector[pair[int, pair[double, double]]] get_persistence(int homology_coeff_field, double min_persistence)
+ vector[int] betti_numbers()
+ vector[int] persistent_betti_numbers(double from_value, double to_value)
+ vector[pair[double,double]] intervals_in_dimension(int dimension)
+ void write_output_diagram(string diagram_file_name)
+ vector[pair[vector[int], vector[int]]] persistence_pairs()
diff --git a/src/cython/gudhi/simplex_tree.pyx b/src/cython/gudhi/simplex_tree.pyx
index e5f9e9d1..604328e9 100644
--- a/src/cython/gudhi/simplex_tree.pyx
+++ b/src/cython/gudhi/simplex_tree.pyx
@@ -1,5 +1,6 @@
from libc.stdint cimport intptr_t
from numpy import array as np_array
+from simplex_tree cimport *
""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
@@ -15,16 +16,6 @@ __author__ = "Vincent Rouvreau"
__copyright__ = "Copyright (C) 2016 Inria"
__license__ = "MIT"
-cdef extern from "Persistent_cohomology_interface.h" namespace "Gudhi":
- cdef cppclass Simplex_tree_persistence_interface "Gudhi::Persistent_cohomology_interface<Gudhi::Simplex_tree<Gudhi::Simplex_tree_options_full_featured>>":
- Simplex_tree_persistence_interface(Simplex_tree_interface_full_featured * st, bool persistence_dim_max)
- vector[pair[int, pair[double, double]]] get_persistence(int homology_coeff_field, double min_persistence)
- vector[int] betti_numbers()
- vector[int] persistent_betti_numbers(double from_value, double to_value)
- vector[pair[double,double]] intervals_in_dimension(int dimension)
- void write_output_diagram(string diagram_file_name)
- vector[pair[vector[int], vector[int]]] persistence_pairs()
-
# SimplexTree python interface
cdef class SimplexTree:
"""The simplex tree is an efficient and flexible data structure for