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-rwxr-xr-xsrc/cython/test/test_rips_complex.py47
1 files changed, 45 insertions, 2 deletions
diff --git a/src/cython/test/test_rips_complex.py b/src/cython/test/test_rips_complex.py
index 687e8529..464c69e5 100755
--- a/src/cython/test/test_rips_complex.py
+++ b/src/cython/test/test_rips_complex.py
@@ -1,4 +1,5 @@
from gudhi import RipsComplex
+from math import sqrt
"""This file is part of the Gudhi Library. The Gudhi library
(Geometric Understanding in Higher Dimensions) is a generic C++
@@ -31,7 +32,7 @@ def test_empty_rips():
rips_complex = RipsComplex()
assert rips_complex.__is_defined() == True
-def test_rips():
+def test_rips_from_points():
point_list = [[0, 0], [1, 0], [0, 1], [1, 1]]
rips_complex = RipsComplex(points=point_list, max_edge_length=42)
@@ -55,7 +56,7 @@ def test_rips():
[([0, 1], 1.0), ([0, 2], 1.0),
([0, 3], 1.4142135623730951)]
-def test_filtered_rips():
+def test_filtered_rips_from_points():
point_list = [[0, 0], [1, 0], [0, 1], [1, 1]]
filtered_rips = RipsComplex(points=point_list, max_edge_length=1.0)
@@ -66,3 +67,45 @@ def test_filtered_rips():
assert simplex_tree.num_simplices() == 8
assert simplex_tree.num_vertices() == 4
+
+def test_rips_from_distance_matrix():
+ distance_matrix = [[0],
+ [1, 0],
+ [1, sqrt(2), 0],
+ [sqrt(2), 1, 1, 0]]
+ rips_complex = RipsComplex(distance_matrix=distance_matrix, max_edge_length=42)
+
+ simplex_tree = rips_complex.create_simplex_tree(max_dimension=1)
+
+ assert simplex_tree.__is_defined() == True
+ assert simplex_tree.__is_persistence_defined() == False
+
+ assert simplex_tree.num_simplices() == 10
+ assert simplex_tree.num_vertices() == 4
+
+ assert simplex_tree.get_filtered_tree() == \
+ [([0], 0.0), ([1], 0.0), ([2], 0.0), ([3], 0.0),
+ ([0, 1], 1.0), ([0, 2], 1.0), ([1, 3], 1.0),
+ ([2, 3], 1.0), ([1, 2], 1.4142135623730951),
+ ([0, 3], 1.4142135623730951)]
+ assert simplex_tree.get_star_tree([0]) == \
+ [([0], 0.0), ([0, 1], 1.0), ([0, 2], 1.0),
+ ([0, 3], 1.4142135623730951)]
+ assert simplex_tree.get_coface_tree([0], 1) == \
+ [([0, 1], 1.0), ([0, 2], 1.0),
+ ([0, 3], 1.4142135623730951)]
+
+def test_filtered_rips_from_distance_matrix():
+ distance_matrix = [[0],
+ [1, 0],
+ [1, sqrt(2), 0],
+ [sqrt(2), 1, 1, 0]]
+ filtered_rips = RipsComplex(distance_matrix=distance_matrix, max_edge_length=1.0)
+
+ simplex_tree = filtered_rips.create_simplex_tree(max_dimension=1)
+
+ assert simplex_tree.__is_defined() == True
+ assert simplex_tree.__is_persistence_defined() == False
+
+ assert simplex_tree.num_simplices() == 8
+ assert simplex_tree.num_vertices() == 4