diff options
Diffstat (limited to 'trunk/src/Persistent_cohomology/example/CMakeLists.txt')
-rw-r--r-- | trunk/src/Persistent_cohomology/example/CMakeLists.txt | 122 |
1 files changed, 122 insertions, 0 deletions
diff --git a/trunk/src/Persistent_cohomology/example/CMakeLists.txt b/trunk/src/Persistent_cohomology/example/CMakeLists.txt new file mode 100644 index 00000000..f47de4c3 --- /dev/null +++ b/trunk/src/Persistent_cohomology/example/CMakeLists.txt @@ -0,0 +1,122 @@ +cmake_minimum_required(VERSION 2.6) +project(Persistent_cohomology_examples) + +add_executable(plain_homology plain_homology.cpp) + +add_executable(persistence_from_simple_simplex_tree persistence_from_simple_simplex_tree.cpp) + +add_executable(rips_distance_matrix_persistence rips_distance_matrix_persistence.cpp) +target_link_libraries(rips_distance_matrix_persistence ${Boost_PROGRAM_OPTIONS_LIBRARY}) + +add_executable(rips_persistence rips_persistence.cpp) +target_link_libraries(rips_persistence ${Boost_PROGRAM_OPTIONS_LIBRARY}) + +add_executable(rips_persistence_step_by_step rips_persistence_step_by_step.cpp) +target_link_libraries(rips_persistence_step_by_step ${Boost_PROGRAM_OPTIONS_LIBRARY}) + +add_executable(rips_persistence_via_boundary_matrix rips_persistence_via_boundary_matrix.cpp) +target_link_libraries(rips_persistence_via_boundary_matrix ${Boost_PROGRAM_OPTIONS_LIBRARY}) + +add_executable(persistence_from_file persistence_from_file.cpp) +target_link_libraries(persistence_from_file ${Boost_PROGRAM_OPTIONS_LIBRARY}) + +if (TBB_FOUND) + target_link_libraries(plain_homology ${TBB_LIBRARIES}) + target_link_libraries(persistence_from_simple_simplex_tree ${TBB_LIBRARIES}) + target_link_libraries(rips_distance_matrix_persistence ${TBB_LIBRARIES}) + target_link_libraries(rips_persistence ${TBB_LIBRARIES}) + target_link_libraries(rips_persistence_step_by_step ${TBB_LIBRARIES}) + target_link_libraries(rips_persistence_via_boundary_matrix ${TBB_LIBRARIES}) + target_link_libraries(persistence_from_file ${TBB_LIBRARIES}) +endif() + +add_test(NAME Persistent_cohomology_example_plain_homology COMMAND $<TARGET_FILE:plain_homology>) +add_test(NAME Persistent_cohomology_example_from_simple_simplex_tree COMMAND $<TARGET_FILE:persistence_from_simple_simplex_tree> + "1" "0") +add_test(NAME Persistent_cohomology_example_from_rips_distance_matrix COMMAND $<TARGET_FILE:rips_distance_matrix_persistence> + "${CMAKE_SOURCE_DIR}/data/distance_matrix/full_square_distance_matrix.csv" "-r" "1.0" "-d" "3" "-p" "3" "-m" "0") +add_test(NAME Persistent_cohomology_example_from_rips_on_tore_3D COMMAND $<TARGET_FILE:rips_persistence> + "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" "-r" "0.25" "-m" "0.5" "-d" "3" "-p" "3") +add_test(NAME Persistent_cohomology_example_from_rips_step_by_step_on_tore_3D COMMAND $<TARGET_FILE:rips_persistence_step_by_step> + "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" "-r" "0.25" "-m" "0.5" "-d" "3" "-p" "3") +add_test(NAME Persistent_cohomology_example_via_boundary_matrix COMMAND $<TARGET_FILE:rips_persistence_via_boundary_matrix> + "${CMAKE_SOURCE_DIR}/data/points/Kl.off" "-r" "0.16" "-d" "3" "-p" "3" "-m" "100") +add_test(NAME Persistent_cohomology_example_from_file_3_2_0 COMMAND $<TARGET_FILE:persistence_from_file> + "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "2" "-m" "0") +add_test(NAME Persistent_cohomology_example_from_file_3_3_100 COMMAND $<TARGET_FILE:persistence_from_file> + "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "3" "-m" "100") + +install(TARGETS plain_homology DESTINATION bin) +install(TARGETS persistence_from_simple_simplex_tree DESTINATION bin) +install(TARGETS rips_distance_matrix_persistence DESTINATION bin) +install(TARGETS rips_persistence DESTINATION bin) +install(TARGETS rips_persistence_step_by_step DESTINATION bin) +install(TARGETS rips_persistence_via_boundary_matrix DESTINATION bin) +install(TARGETS persistence_from_file DESTINATION bin) + +if(GMP_FOUND) + if(GMPXX_FOUND) + add_executable(rips_multifield_persistence rips_multifield_persistence.cpp ) + target_link_libraries(rips_multifield_persistence + ${Boost_PROGRAM_OPTIONS_LIBRARY} ${GMPXX_LIBRARIES} ${GMP_LIBRARIES}) + if (TBB_FOUND) + target_link_libraries(rips_multifield_persistence ${TBB_LIBRARIES}) + endif(TBB_FOUND) + add_test(NAME Persistent_cohomology_example_multifield_2_71 COMMAND $<TARGET_FILE:rips_multifield_persistence> + "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" "-r" "0.25" "-m" "0.5" "-d" "3" "-p" "2" "-q" "71") + install(TARGETS rips_multifield_persistence DESTINATION bin) + endif(GMPXX_FOUND) +endif(GMP_FOUND) + +if(CGAL_FOUND) + add_executable(alpha_complex_3d_persistence alpha_complex_3d_persistence.cpp) + target_link_libraries(alpha_complex_3d_persistence ${CGAL_LIBRARY}) + add_executable(exact_alpha_complex_3d_persistence exact_alpha_complex_3d_persistence.cpp) + target_link_libraries(exact_alpha_complex_3d_persistence ${CGAL_LIBRARY}) + add_executable(weighted_alpha_complex_3d_persistence weighted_alpha_complex_3d_persistence.cpp) + target_link_libraries(weighted_alpha_complex_3d_persistence ${CGAL_LIBRARY}) + + if (TBB_FOUND) + target_link_libraries(alpha_complex_3d_persistence ${TBB_LIBRARIES}) + target_link_libraries(exact_alpha_complex_3d_persistence ${TBB_LIBRARIES}) + target_link_libraries(weighted_alpha_complex_3d_persistence ${TBB_LIBRARIES}) + endif(TBB_FOUND) + add_test(NAME Persistent_cohomology_example_alpha_complex_3d COMMAND $<TARGET_FILE:alpha_complex_3d_persistence> + "${CMAKE_SOURCE_DIR}/data/points/tore3D_300.off" "2" "0.45") + add_test(NAME Persistent_cohomology_example_exact_alpha_complex_3d COMMAND $<TARGET_FILE:exact_alpha_complex_3d_persistence> + "${CMAKE_SOURCE_DIR}/data/points/tore3D_300.off" "2" "0.45") + add_test(NAME Persistent_cohomology_example_weighted_alpha_complex_3d COMMAND $<TARGET_FILE:weighted_alpha_complex_3d_persistence> + "${CMAKE_SOURCE_DIR}/data/points/tore3D_300.off" "${CMAKE_SOURCE_DIR}/data/points/tore3D_300.weights" "2" "0.45") + + install(TARGETS alpha_complex_3d_persistence DESTINATION bin) + install(TARGETS exact_alpha_complex_3d_persistence DESTINATION bin) + install(TARGETS weighted_alpha_complex_3d_persistence DESTINATION bin) + + if (NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.7.0) + add_executable (alpha_complex_persistence alpha_complex_persistence.cpp) + target_link_libraries(alpha_complex_persistence + ${CGAL_LIBRARY} ${Boost_PROGRAM_OPTIONS_LIBRARY}) + + add_executable(periodic_alpha_complex_3d_persistence periodic_alpha_complex_3d_persistence.cpp) + target_link_libraries(periodic_alpha_complex_3d_persistence ${CGAL_LIBRARY}) + + add_executable(custom_persistence_sort custom_persistence_sort.cpp) + target_link_libraries(custom_persistence_sort ${CGAL_LIBRARY}) + + if (TBB_FOUND) + target_link_libraries(alpha_complex_persistence ${TBB_LIBRARIES}) + target_link_libraries(periodic_alpha_complex_3d_persistence ${TBB_LIBRARIES}) + target_link_libraries(custom_persistence_sort ${TBB_LIBRARIES}) + endif(TBB_FOUND) + add_test(NAME Persistent_cohomology_example_alpha_complex COMMAND $<TARGET_FILE:alpha_complex_persistence> + "${CMAKE_SOURCE_DIR}/data/points/tore3D_300.off" "-p" "2" "-m" "0.45") + add_test(NAME Persistent_cohomology_example_periodic_alpha_complex_3d COMMAND $<TARGET_FILE:periodic_alpha_complex_3d_persistence> + "${CMAKE_SOURCE_DIR}/data/points/grid_10_10_10_in_0_1.off" "${CMAKE_SOURCE_DIR}/data/points/iso_cuboid_3_in_0_1.txt" "2" "0") + add_test(NAME Persistent_cohomology_example_custom_persistence_sort COMMAND $<TARGET_FILE:custom_persistence_sort>) + + install(TARGETS alpha_complex_persistence DESTINATION bin) + install(TARGETS periodic_alpha_complex_3d_persistence DESTINATION bin) + install(TARGETS custom_persistence_sort DESTINATION bin) + + endif (NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.7.0) +endif(CGAL_FOUND) |