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2017-02-27Add TBB compilation support and documentationvrouvrea
Add Matplotlib results in GUDHI persistence graphical tools git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2112 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e9fe1111d3a7d82c004a390cee77197221f117ec
2017-02-27Alpha complex requires CGAL 4.7 (not 4.8)vrouvrea
Add CMake configuration to cythonize with TBB when found git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2110 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8341a46af52d74f17e5b1fcbb609f5a2d1da52af
2017-02-24Modifications for MacOSX compilationvrouvrea
Add GUDHI web site eader and nice colors for the python doc git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2109 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20923bc3f304cfe96aec58030920c043400c3dd4
2017-02-23Doc review fix (sphinx typo)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2097 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e9e35a69ce1286a040348b2a49cd6093342b17fc
2017-02-22Fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2093 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 91c0d0e66cc12c305dae9e28454a7b9907c1c361
2017-02-22Fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2092 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df50df0878cdb5ae351b96b4b29e4c95940ae4b8
2017-02-22Code review fix (it was not the correct alpa complex example for persistence)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2091 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 990c071fc32bc88ba7bff1a1a1f4957e8923a0c6
2017-02-22Code review fix (revision numbers for python version)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2090 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a0ed2167cc2efdb5a08f91866ee071daa062b61
2017-02-22Fix code review (we are building Cython and not demos)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2089 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cfa8fb387b808ab846d61b974703988121507080
2017-02-16Do not use args default value set to []vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2082 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 107892dbf3afcf8d46c80f49470e350f57d0090e
2017-02-16Remove pandas examples and use of OFF files interfaces to be more consistent ↵vrouvrea
(pandas interface is not that hard to be done) Add of distance matrix in Rips git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2081 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3a3b24f0824eed2710edb5bf17d120039973bf62
2017-02-03Modification for GUDHI version 2.0.0vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2060 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b91c810b51851f5ef98b09dd58ce0359003390d
2017-02-03intervals in dimension documentation typovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2057 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 471efb27b0b669a0112b90b44b32e6117bc772d4
2017-02-03Add intervals in dimension function in cubical alsovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2056 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c1fd5ee1283204c7bef96c5f6245e982657dc1cb
2017-02-03Automatic examples documentation page generationvrouvrea
alpha_rips_persistence_bottleneck_distance example for python Add intervals_in_dim function for simplex tree git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2055 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 460fbe5db9f0c08776952106e729a21460bec36f
2017-02-02Doc updatevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2051 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 718698efa6fdb133b51923c449d97cd2365f75ae
2017-02-02Change doc html theme.vrouvrea
Change tables git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2047 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aaa29b8f610d506efc3762ad17c4fd768e74d399
2017-01-30Biblio fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2030 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b2cbbd0486b14d27230287cd97582285258eb74
2017-01-27Add bottleneck distancevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2019 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1320379f3d41ef4d11326c1aad1dd20469d3f4e0
2017-01-26Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2013 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 28547c36fb65eea6cf30091678e132763c3d0507
2017-01-26Merge bottleneck-doc-glisse dev in trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2012 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52eadba00ed5f4e072dbee58de00b0f68b1f0cfb
2017-01-25Fix rips complex with the new interfacevrouvrea
Remove mini simplex tree Fix persistent cohomology doc - only simplex tree used Remove useless type definition in Cython C++ interfaces git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2003 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fff43192b00df1c70d59109a6c14932013992ff1
2017-01-24Merge Alpha Rips persistence bottleneck distance example and its test in ↵vrouvrea
cmake from bottleneck_misc_fixes branch git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1997 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a632080c18c119e4fcff9a626e2552c54cf57880
2017-01-24Add Alpha Rips persistence bottleneck distance example and its test in cmakevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1996 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 30c7f3c253730ea8384ae143a629e9b22ef6d507
2017-01-24Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1994 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f0adf9d7d1be7f0cb85f1ff2d0e41295d6e9ae0
2017-01-24Remove utils for bottleneckvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1993 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2bcefc9c6c59f7fae41306c7dfd844942ad5ccff
2017-01-24Moved from utils to examplevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1992 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: efa6dbfb45341eae13cd0cc3b050e45174596cab
2017-01-24Last modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1991 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e7e28db5a3f79ba5f65f4a3c025d23703638362
2017-01-24Bottleneck does not require Eigen3vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1990 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b04a823f288760750f9146c7b88211c56f4d4f22
2017-01-24Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1989 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0743b9beb802b839357ecce17e11af5d4ef2a163
2017-01-23Add an util to compute bottleneck distance between the alpha and a ripsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1984 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d036fa6129f4ee326335787ed2968f505c5bb276
2017-01-21Tweaks to the doc of Bottleneck.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-doc-glisse@1983 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5300e7c4cfd3ffe22fa7ec906a4193d99d95453b
2017-01-21Branch to fix a few things in the doc of Bottleneck.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-doc-glisse@1982 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d5cab8a0cf4acb1f825790fe42094703e6104785
2017-01-20Merge qt5 branch for GudhUI tompile wit qt5 instead of qt4vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1977 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc3a76decfb432227892bd231c1080577c6ac06e
2017-01-20Merge last trunk modifications in qt5 branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/qt5@1976 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7f8c5b9443bf0996347fe459fe21c42a2fed0cca
2017-01-20Merge bottleneck_misc_fixes branch to fix bottleneck cpplint issue and ↵vrouvrea
doxygen warning git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1974 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8704c1ff42c8e0f78ba2e70d83b71c91b3274a0
2017-01-20Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1973 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e96278cb0c55788b6aa78fa4a52dae7197b09adb
2017-01-20cpplint fixesvrouvrea
doxygen warning fixes git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1972 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5b2328016edb6b5b30de668a0488c576d3d92c40
2017-01-20Merge of distance_matrix_in_rips_module development into te trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1969 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 231f9e7c2cea40a751a1c6dc7d544474b2426bc0
2017-01-20Fix code reviewvrouvrea
Remove unused include git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1968 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc983a4be66296869cbeddd66b9d48e25a24b5ef
2017-01-19Branch to fix misc issues (cpplint, doxygen, ...)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1965 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ff6a9104f742f8906b2c19d6101b0538920aefe
2017-01-19Add rips_persistence_step_by_step.cpp in examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1963 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 69ccff62e0c05a1fc38a957dd67a51932a80b9ef
2017-01-19Only OFF filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1961 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 884285c899de8de4495b8372305052137b8448f6
2017-01-19Strange Floating Point Exception : 8 on MacOSX since global type removalvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1958 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e0afcd91aa3b8e166f2ed439a7542934ffe0b1b5
2017-01-19Fix ccplint issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1956 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 01ffb1d403c65a90d081cf17fe8f595c11a34bab
2017-01-17using double for filtration value type instead of float (error on windows)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1942 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 796ab5c933f1d0eb18685a0f2f1626b0fa9aa76b
2017-01-17Add of a rips_persistence example step by step (without Rips_complex module)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1941 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0e1a13775b50d71474ff7317511a4f7f8ceec05b
2017-01-16Remove the usage functions and modified the doc for oneskeletonripspoints ↵vrouvrea
and oneskeletonripsdistance. No added value as distance matrix and points set is hard defined. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1939 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 13142245f95995a13c5bf484a6f8bf5d4bf53b58
2017-01-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1938 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8af39a00b9134dbcc77883412c29d7184479979b
2017-01-07Fix user version for gudhi patchesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1936 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 462555b65b7b3c724a08d11e9b5a2776bf3a1bd8
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