Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-04-29 | Merge remote-tracking branch 'origin/master' into gen2 | Marc Glisse | |
2020-04-25 | Merge pull request #292 from VincentRouvreau/one_biblio_for_all_sphinx | Vincent Rouvreau | |
Fix bibliography for sphinx | |||
2020-04-24 | Code review: plain instead of unsrt for biblio - concatenate biblio files - ↵ | ROUVREAU Vincent | |
undo cgal citation removal | |||
2020-04-24 | Merge pull request #277 from mglisse/compute_persistence | Marc Glisse | |
compute_persistence in python | |||
2020-04-24 | Fix bibliography for sphinx | ROUVREAU Vincent | |
2020-04-23 | Merge remote-tracking branch 'origin/master' into compute_persistence | Marc Glisse | |
2020-04-23 | Add missing DOI | Marc Glisse | |
2020-04-23 | Fix pasto in the doc | Marc Glisse | |
2020-04-22 | Merge pull request #291 from mglisse/test-hnsw | Marc Glisse | |
Reduce the probability of failure of test_dtm | |||
2020-04-22 | Reduce the probability of failure of test_dtm | Marc Glisse | |
It is expected that hnsw sometimes misses one neighbor, which has an impact on the DTM, especially if the number of neighbors considered is low. | |||
2020-04-22 | Merge pull request #289 from mglisse/doc-eagerpy | Marc Glisse | |
Document several optional dependencies of knn | |||
2020-04-22 | Document several optional dependencies of knn | Marc Glisse | |
2020-04-21 | Merge pull request #287 from VincentRouvreau/sphinx_tests_first | Vincent Rouvreau | |
Make sphinx test as first | |||
2020-04-20 | Merge branch 'master' into sphinx_tests_first | ROUVREAU Vincent | |
2020-04-20 | Merge pull request #286 from mglisse/circleci | Marc Glisse | |
Tweak CircleCI parallelism | |||
2020-04-20 | Fix #279 | ROUVREAU Vincent | |
2020-04-20 | Random CircleCI tweak | Marc Glisse | |
2020-04-20 | Merge pull request #265 from mglisse/dtm | Marc Glisse | |
DTM | |||
2020-04-20 | Merge pull request #284 from mglisse/wdiag | Marc Glisse | |
Simplify distance-to-diagonal in Wasserstein | |||
2020-04-20 | Explicitly pass sort_results=True on some tests | Marc Glisse | |
2020-04-20 | Reintroduce _proj_on_diag, with a unit test | Marc Glisse | |
2020-04-20 | Add __license__ | Marc Glisse | |
2020-04-19 | Test comparison with persistence_pairs() | Marc Glisse | |
2020-04-19 | Drop redundant test | Marc Glisse | |
torch.isnan(None) raises an exception anyway | |||
2020-04-17 | Simplify distance-to-diagonal in Wasserstein | Marc Glisse | |
2020-04-17 | Merge pull request #268 from mglisse/filtration | Marc Glisse | |
Streamline initialize_filtration | |||
2020-04-17 | Merge remote-tracking branch 'origin/master' into filtration | Marc Glisse | |
2020-04-16 | Merge pull request #260 from VincentRouvreau/alpha_complex_improvement | Vincent Rouvreau | |
merge https://github.com/mglisse/gudhi-devel/tree/alpha-cache | |||
2020-04-16 | Fix doc of Simplex_tree about keys | Marc Glisse | |
2020-04-16 | Update the concept of the simplicial complex | Marc Glisse | |
We use the key now. It wouldn't be hard to use an unordered_map, but since we usually have an unused field key... | |||
2020-04-14 | Check that the gradient is not NaN | Marc Glisse | |
This can easily happen with pytorch, and there is special code to avoid it. | |||
2020-04-14 | Merge remote-tracking branch 'origin/master' into dtm | Marc Glisse | |
2020-04-14 | Doc improvements | Marc Glisse | |
2020-04-14 | Install Ubuntu's python3-grpcio | Marc Glisse | |
since the one from PyPI seems broken at the moment. | |||
2020-04-14 | EagerPy in cmake | Marc Glisse | |
2020-04-14 | More testing | Marc Glisse | |
2020-04-14 | pip install eagerpy | Marc Glisse | |
2020-04-13 | Tweak to detect fit_transform | Marc Glisse | |
2020-04-13 | Remove left-over code | Marc Glisse | |
eagerpy is only used with enable_autodiff | |||
2020-04-13 | Generalize enable_autodiff to more implementations | Marc Glisse | |
Still limited to L^p | |||
2020-04-13 | Fix NaN gradient with pytorch | Marc Glisse | |
2020-04-13 | Small autodiff tweaks | Marc Glisse | |
2020-04-13 | enable_autodiff with keops | Marc Glisse | |
This doesn't seem like the best way to handle it, we may want to handle it like a wrapper that gets the indices from knn (whatever backend) and then computes the distances. | |||
2020-04-12 | Parallelize the "precomputed" case of knn | Marc Glisse | |
It is supposed to be possible to compile numpy with openmp, but it looks like it isn't done in any of the usual packages. It may be possible to refactor that code so there is less redundancy. | |||
2020-04-11 | Use longer names | Marc Glisse | |
2020-04-07 | Document dependencies for building the doc | Marc Glisse | |
2020-04-06 | Merge pull request #167 from tlacombe/wbary-theo | Marc Glisse | |
Wbary theo | |||
2020-04-06 | Remove trailing whitespace | Marc Glisse | |
2020-04-06 | Merge remote-tracking branch 'upstream/master' into wbary-theo | Marc Glisse | |
2020-04-06 | Use compute_persistence in an example | Marc Glisse | |