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2017-04-14Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2346 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 29b4678c6e1ecaec8c43fc68a36aa988ddcbf298
2017-04-13Answer to Marc's comments (MG5)pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2344 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5d2cd22cb13d74b1ca99892eb8773d8db2e7db2b
2017-04-13Answer to Vincent's comments. At the moment I need to discuss how to correct ↵pdlotko
the doc. At the moment make doxygen generate some errors. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2342 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4bb5c3b30bca852045fb414eacf59936975a3855
2017-04-12a few more correction. First of all, bottleneck distance is added (although ↵pdlotko
there is something strange in the results, FG has been pinged about this). Second of all, all the programs in utylites should now read general files (and dimension of persistence to be read is one of the parameteds of files). This still need to be tested and will be tested soon. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2339 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e60d14f07db223646597230d7f0bd78dd090bc0b
2017-04-12Merge of bottleneck-glisse branch to speed up bottleneck computationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2335 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 164b0e8de1d89e5b056dd01e63d5cb6dae6c67e1
2017-04-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2334 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9461830172c72a205520ae197656c480b1cfcaaf
2017-04-11Fix line length cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2333 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 23035b47dd95c008feb546d7ffb17b96cd7edcfa
2017-04-11Fix some #include ""vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c15320d156c2b928e9eb664a2afed8fa9809e7e
2017-04-11Move Euclidean_distance in Gudhi namespacevrouvrea
Fix cpplints git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2331 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bc5609c2df490db50e82b56a5e6d899dc6370182
2017-04-10Merge branch farthest distancevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2330 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc24c2112694ac41b71a639ccc6da7351afcefc2
2017-04-10Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2329 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ba0fbf37ea8108d8c3ca21162d7cb815a92336f7
2017-04-10Fix and rename test farthestvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2328 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1761bf66bcf6d45f72a051fa9a62c4699e3999d
2017-04-10Merge typo fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2327 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 767718d8f949a7c92212c61dd00225d687c25ead
2017-04-10Typo fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2326 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7c88a0635bdeffc643127106574501ce72645546
2017-04-10Merge code reviews fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2325 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1a35ff8f60aee0bd150db7b571b13a50e843851a
2017-04-10mac osx version is 10.12 and not 10.9 (cf. mail Bertrand Michel)vrouvrea
Add text for Windows Python 3.X installation and forinstallation with several Python installed on the system. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2324 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 939d5d4a94c2430de11b3dcbc29a65aad4bfd885
2017-04-09Merging two functions set_up_values_of_landscapes in persistence landscapes ↵pdlotko
on a grid into one. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2322 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c44a3b5adb393900d5dc6e76faff0a2c6f0bca0e
2017-04-09Answer to Marc's comments. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2321 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4eb08a7ca5664fffd8e683c30871d3fd53d1a551
2017-04-08Answer to Marc's comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2320 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 564683f4a60572ac78f9c45c4cc589d97e7663ed
2017-04-07Answers to Marc's comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2319 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 51b36668541a99c43ad801a9449d7208135f83b7
2017-04-07Adding a new reading method for persistence diagrams.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2318 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dd4dcc3da249ae938674d3bd4db537ac982368c0
2017-04-07Answers to Marc's commentspdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2317 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f941a6b20210282408d0ef95b84daa973add2513
2017-04-07Clarify doc about Squared_distance_d in Subsampling.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2315 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5559e1c426569fba1dd4cd350a8697ab7e3260f1
2017-04-06Answer to MG4 comments. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2314 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e59312ce2c58d4ac19f2e9d46b7ca4dd29ed8e6e
2017-04-06Answering MG3 comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2313 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3bae7a55d05831af55a5b1c3e0d2695383af325f
2017-04-05Use an unordered_set for unmatched_in_u instead of an open-coded flat_set.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2312 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 37137a43f781e4646c4149d9528a6a95e1c642be
2017-04-05In Kd_tree::remove, test the point index instead of the coordinates.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2311 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e8d50867d77eea455c34dc5a89ed9e0f45fbeeb7
2017-04-01remove bad named *_tree() functionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2300 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 512403fe0838fb2691e0af94c55772bff942b740
2017-04-01Merge last trunk modifications and fix new rips interfacevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2299 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e836cba1a372f609e94b66b6db512817a3d875e
2017-03-31Answer to Vincent's email.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2295 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 81231c61a677939c03552b26ae065dfff970b759
2017-03-31solved problem with cmake.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2294 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34fc791c80d9e66ab18e992f73bbf3252b3d5e1e
2017-03-31Bad choose of exact / approx computationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2293 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ba263cefcc0a76d223e4fba7f21ed96a525d16e
2017-03-31PR : Typo in installation docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2292 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b048844ac0bd0a7e4485b24b06d7a11ce9f9274
2017-03-31Typo with Perseus-style filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2291 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d76201ecfd7a1f236a04243fe86ca4eb0c21d8b1
2017-03-31Typo in docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2290 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f71b21674190c3b4c6e472f49680de2ca211cf7c
2017-03-31Fix examples testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2289 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9d386b82c89601da233f7c61254a023ddffc9abc
2017-03-30Move example tests in a new CMakeLists.txtvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2288 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8b2bce4c8be8a34b8fba9c664d2f0b3b60a50c20
2017-03-29Small modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2286 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34dc48a00ed8270967952b8763006b17f96a13e7
2017-03-29Small modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2285 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4bf077b4d3b729c4d133e242d57d08ed9a04ae76
2017-03-29Declare the Kd_tree directly.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2282 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c017cc9368a167fe99b5004636bcbe8734266d3a
2017-03-29Version ready to be merge with bottleneck distancepdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2281 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d47c6fe44885688b65a33481a1c27817a73d1b4a
2017-03-29Shall not be commitedvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2278 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 11683d4bb25093dabd09034c5dd39d1576672883
2017-03-28Add commentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2277 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2df390d8a87130a01fd3cae151e5a057ab85e049
2017-03-28Use only insert (simplex and subfaces)vrouvrea
Remove useless initialize_filtration git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2276 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eed1a67e2f83e3a1945cc24b11454ed1ef024ba6
2017-03-28Merge fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2275 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a3a4f9eb52cbb3ba07589fbbf7049bffd63a80b
2017-03-28Missing a testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 30330428b0071967367d1708338de0c7d40d8a67
2017-03-28Missing a test of cythonvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2273 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5fadfa6c83094a2c53f143650c6283383f3775cf
2017-03-28Missing a test for cythonvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2272 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 223961ca5575e07d0db2c93ee0326864166980d8
2017-03-28deleting concretization folder. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2271 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c4330166bd9f70b2b39c4494728c85f972e3363c
2017-03-28Longer commentsglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2270 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa5f87490ae2b94cbe6b4789001b0075f8a4726a
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