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2022-06-17doc review: tuple instead of pair - index is 'm' and not 'n'Vincent Rouvreau
2022-06-17Merge masterVincent Rouvreau
2022-06-16Merge pull request #498 from Hind-M/fetch_datasetsVincent Rouvreau
Fetch datasets
2022-06-09Merge pull request #607 from VincentRouvreau/how_to_compile_gudhi_in_a_conda_envVincent Rouvreau
Instructions to compile gudhi in a conda env
2022-06-09[skip ci] doc review: rename the repository gudhi-develVincent Rouvreau
2022-06-09[skip ci] doc review: rename the repository gudhi-devel, precise how to ↵Vincent Rouvreau
clone and init submodules
2022-06-09[skip ci] doc review: Update .github/how_to_compile_gudhi_in_a_conda_env.mdVincent Rouvreau
Co-authored-by: Hind-M <70631848+Hind-M@users.noreply.github.com>
2022-06-09[skip ci] doc review: Update .github/how_to_compile_gudhi_in_a_conda_env.mdVincent Rouvreau
Co-authored-by: Hind-M <70631848+Hind-M@users.noreply.github.com>
2022-06-09[skip ci] code review: Update .github/how_to_compile_gudhi_in_a_conda_env.mdVincent Rouvreau
Co-authored-by: Hind-M <70631848+Hind-M@users.noreply.github.com>
2022-06-08Merge pull request #632 from albert-github/feature/bug_class_diagramsVincent Rouvreau
Documentation: Obsolete CLASS_DIAGRAMS
2022-06-08Merge pull request #633 from albert-github/feature/bug_copy_doxyfile_inVincent Rouvreau
No need to copy Doxyfile.in
2022-06-08Merge branch 'master' into feature/bug_class_diagramsVincent Rouvreau
2022-06-08Merge pull request #627 from albert-github/feature/bug_docu_redirect_2Vincent Rouvreau
Documentation: Some automatic redirects
2022-06-08Merge pull request #616 from VincentRouvreau/doxygen_unbalanced_groupingsVincent Rouvreau
Fix unbalanced groups and some doxygen typos
2022-06-07Rephrase description for fetch functionsHind-M
2022-06-07Merge remote-tracking branch 'upstream/master' into fetch_datasetsHind-M
2022-06-07Merge pull request #590 from ↵Vincent Rouvreau
VincentRouvreau/simplex_tree_extended_persistence_enhancement extended_persistence uses directly get_persistent_pairs
2022-06-03Merge pull request #624 from albert-github/feature/bug_spellVincent Rouvreau
Spelling corrections
2022-05-25Add info in the doc concerning default data_home and 'GUDHI_DATA' env variableHind-M
2022-05-24Merge pull request #630 from albert-github/feature/bug_mathjax_3Vincent Rouvreau
Documentation: Render formulas by means of MathJax 3
2022-05-24Update src/cmake/modules/GUDHI_doxygen_target.cmakealbert-github
Co-authored-by: Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com>
2022-05-24Make get_data_home function privateHind-M
2022-05-24Merge pull request #623 from albert-github/feature/bug_gudhi_exampleVincent Rouvreau
Documentation: handling references to examples in a more transparent way
2022-05-24No need to copy Doxyfile.inalbert-github
In my opinion there is no need to copy the `Doxyfile.in` file to the build directory (neither in the User nor the development version). The usage is: ``` configure_file(${GUDHI_DOXYGEN_SOURCE_PREFIX}/Doxyfile.in "${CMAKE_CURRENT_BINARY_DIR}/Doxyfile" @ONLY) ``` in the file `src/cmake/modules/GUDHI_doxygen_target.cmake` and we see that this uses the file from its original source directory.
2022-05-24Specify in doc the use of cache when fetching datasets with wrapping functionsHind-M
2022-05-24Use autofunction instead of automodule in doc and add 2d spiral imageHind-M
2022-05-24Documentation: Obsolete CLASS_DIARAMSalbert-github
Since doxygen version 1.9.3 the settings `CLASS_DIAGRAMS` and `CLASS_GRAPH` have been integrated into `CLASS_GRAPH` and `CLASS_DIAGRAMS` is now obsolete. The value of `CLASS+GRAPH` doesn't have to be adjusted, in this case, as it was already set to `NO`.
2022-05-24Documentation: Render formuals by means of MathJax 3albert-github
Oops left test version in it.
2022-05-24Documentation: Render formulas by means of MathJax 3albert-github
Based on review, made a switch between MathJax 2 and MathJax 3 based on the doxygen version
2022-05-23Documentation: Render formuals by means of MathJax 3albert-github
- create entries in Doxyfile.in for the use of MathJax - adjust formula so it is properly rendered in MathJax 3 (formula will also work with MathJax 2) (available in doxygen since doxygen 1.9.2)
2022-05-23Merge branch 'master' into how_to_compile_gudhi_in_a_conda_envVincent Rouvreau
2022-05-23Documentation: handling references to examples in a more transparent wayalbert-github
Adding the other examples also with `gudhi_example_link`.
2022-05-23Documentation: Some automatic redirectsalbert-github
Corrected some more automatic redirects.
2022-05-23Merge masterVincent Rouvreau
2022-05-23doc review: remove wrong commentVincent Rouvreau
2022-05-23doc review: comment on number of CPU for python moduleVincent Rouvreau
2022-05-23doc review: comment on remove build directoryVincent Rouvreau
2022-05-23Merge pull request #619 from albert-github/feature/bug_persistent_linksVincent Rouvreau
Documentation: Non persistent links
2022-05-23[skip ci] example from a small moleculeVincent Rouvreau
2022-05-23[skip ci] example from a small moleculeVincent Rouvreau
2022-05-23[skip ci] example from a small moleculeVincent Rouvreau
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2022-05-23Merge pull request #618 from albert-github/feature/bug_docu_redirectVincent Rouvreau
Documentation: Updating redirected links
2022-05-23Update src/common/doc/installation.hVincent Rouvreau
2022-05-23Update biblio/bibliography.bibVincent Rouvreau
2022-05-23Update src/common/doc/installation.hVincent Rouvreau
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2022-05-23Merge pull request #617 from albert-github/feature/bug_docu_boostVincent Rouvreau
issue #615 Documentation: references to boost
2022-05-22Update src/Bitmap_cubical_complex/include/gudhi/Bitmap_cubical_complex.halbert-github
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2022-05-22Update src/python/test/test_simplex_tree.pyalbert-github
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2022-05-22Update src/Persistent_cohomology/example/rips_multifield_persistence.cppalbert-github
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2022-05-22Spelling correctionsalbert-github
A number of spelling corrections as reported by the codespell (see: https://github.com/codespell-project/codespell) program and lists. Some remarks: - not considered are grammatical errors - not considered are names in the code although there are a number that could be improved (like `childs` -> `children`) - in the documentation it could be made clearer what are variables and what is running text (e.g. by placing variables in running text between backticks) - some comments are in the French language, I think it would be better to have them in the English (United States version).
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