summaryrefslogtreecommitdiff
AgeCommit message (Collapse)Author
2017-04-19Merge add_test_windows branch to fix add_testvrouvrea
Fix a biblio doxygen warning git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2365 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 72a9180aa6be56fca0b5f357247300df17770159
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-18Rename CMake testsvrouvrea
Add specific GUDHI test coverage function Rename cmake/modules/GUDHI_*.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2362 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 071b1eda7d11b1781a9601a013b88a0b2a9b7bf7
2017-04-18A branch to test add_test CMake function for Windows fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2361 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5aa4461a836552f27e27a3a5204ac77a5a74d97a
2017-04-14Fix doc level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2359 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8c141f6c040abcbf76f8eec21b14389ae850318
2017-04-14Remove scripts/generate_version.sh, use make user_versionvrouvrea
Remove GUDHIVersion.cmake.in (was for scripts/generate_version.sh) and CMakeLists.txt mechanism Modify src/Bitmap_cubical_complex/example/CMakeLists.txt to generate files in build directory git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2358 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32c73be6aa9a0a6fcfde09ebf21ff38d48abf5e0
2017-04-14Fix doc level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2357 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2da8fae99b18cf215de376980266f1281ac95172
2017-04-14Fix Title level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2356 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 755e450afddf28f87164a8f1f22c1f58faf9658a
2017-04-14Fix Sphinx and unitary tests issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2354 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7852df8e3fcea5b0b7f37f79f2b8b34cfd1db62c
2017-04-14Fix cython find issue on Windowsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2350 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b539887838ff48d211ee65f8fddaf53500eb84ea
2017-04-14Try of a fix for Windows cython find mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2347 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4c93e7042d79bfea7c758e726f6393b97334c798
2017-04-14Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2346 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 29b4678c6e1ecaec8c43fc68a36aa988ddcbf298
2017-04-12Merge of bottleneck-glisse branch to speed up bottleneck computationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2335 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 164b0e8de1d89e5b056dd01e63d5cb6dae6c67e1
2017-04-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2334 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9461830172c72a205520ae197656c480b1cfcaaf
2017-04-11Fix line length cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2333 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 23035b47dd95c008feb546d7ffb17b96cd7edcfa
2017-04-11Fix some #include ""vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c15320d156c2b928e9eb664a2afed8fa9809e7e
2017-04-11Move Euclidean_distance in Gudhi namespacevrouvrea
Fix cpplints git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2331 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bc5609c2df490db50e82b56a5e6d899dc6370182
2017-04-10Merge branch farthest distancevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2330 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc24c2112694ac41b71a639ccc6da7351afcefc2
2017-04-10Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2329 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ba0fbf37ea8108d8c3ca21162d7cb815a92336f7
2017-04-10Fix and rename test farthestvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2328 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1761bf66bcf6d45f72a051fa9a62c4699e3999d
2017-04-10Merge typo fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2327 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 767718d8f949a7c92212c61dd00225d687c25ead
2017-04-10Typo fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2326 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7c88a0635bdeffc643127106574501ce72645546
2017-04-10Merge code reviews fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2325 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1a35ff8f60aee0bd150db7b571b13a50e843851a
2017-04-10mac osx version is 10.12 and not 10.9 (cf. mail Bertrand Michel)vrouvrea
Add text for Windows Python 3.X installation and forinstallation with several Python installed on the system. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2324 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 939d5d4a94c2430de11b3dcbc29a65aad4bfd885
2017-04-07Clarify doc about Squared_distance_d in Subsampling.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2315 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5559e1c426569fba1dd4cd350a8697ab7e3260f1
2017-04-05Use an unordered_set for unmatched_in_u instead of an open-coded flat_set.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2312 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 37137a43f781e4646c4149d9528a6a95e1c642be
2017-04-05In Kd_tree::remove, test the point index instead of the coordinates.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2311 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e8d50867d77eea455c34dc5a89ed9e0f45fbeeb7
2017-04-01remove bad named *_tree() functionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2300 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 512403fe0838fb2691e0af94c55772bff942b740
2017-03-31Bad choose of exact / approx computationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2293 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ba263cefcc0a76d223e4fba7f21ed96a525d16e
2017-03-31PR : Typo in installation docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2292 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b048844ac0bd0a7e4485b24b06d7a11ce9f9274
2017-03-31Typo with Perseus-style filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2291 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d76201ecfd7a1f236a04243fe86ca4eb0c21d8b1
2017-03-31Typo in docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2290 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f71b21674190c3b4c6e472f49680de2ca211cf7c
2017-03-31Fix examples testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2289 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9d386b82c89601da233f7c61254a023ddffc9abc
2017-03-30Move example tests in a new CMakeLists.txtvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2288 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8b2bce4c8be8a34b8fba9c664d2f0b3b60a50c20
2017-03-29Small modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2286 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34dc48a00ed8270967952b8763006b17f96a13e7
2017-03-29Small modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2285 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4bf077b4d3b729c4d133e242d57d08ed9a04ae76
2017-03-29Declare the Kd_tree directly.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2282 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c017cc9368a167fe99b5004636bcbe8734266d3a
2017-03-29Shall not be commitedvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2278 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 11683d4bb25093dabd09034c5dd39d1576672883
2017-03-28Add commentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2277 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2df390d8a87130a01fd3cae151e5a057ab85e049
2017-03-28Use only insert (simplex and subfaces)vrouvrea
Remove useless initialize_filtration git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2276 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eed1a67e2f83e3a1945cc24b11454ed1ef024ba6
2017-03-28Merge fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2275 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a3a4f9eb52cbb3ba07589fbbf7049bffd63a80b
2017-03-28Missing a testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 30330428b0071967367d1708338de0c7d40d8a67
2017-03-28Missing a test of cythonvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2273 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5fadfa6c83094a2c53f143650c6283383f3775cf
2017-03-28Missing a test for cythonvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2272 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 223961ca5575e07d0db2c93ee0326864166980d8
2017-03-28Longer commentsglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2270 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa5f87490ae2b94cbe6b4789001b0075f8a4726a
2017-03-28Merge ST_cythonizebranc to fix Python2 and Python3 build, test and generate ↵vrouvrea
documentation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2268 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cd8182efb498503a897dba18315b2e72d47e2164
2017-03-28Make Python interface compile, test and doc for Python2 and Python3vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2267 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f7397ecc5aba27ad4ecc794f4fbf5ca857847113
2017-03-28Different strategies to remove points from unmatched_in_u.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2266 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5ff3d02d50ed3f1be537070d2c840f7ba4c6b433
2017-03-28Replace list with vector, save 30% of the running time...glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2265 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 92ba2895af0715166924abdc1600f20665c76af4
2017-03-28Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2263 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b430e79ecc94bee975d748eb3e2106c7dbab3ce