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2022-06-24Merge pull request #519 from Hind-M/cech_optimizationVincent Rouvreau
Cech optimization
2022-06-21-Add/modify some commentsHind-M
-Some other minor changes -Change license to LGPL
2022-06-09Merge remote-tracking branch 'upstream/master' into cech_optimizationHind-M
2022-06-07Merge remote-tracking branch 'upstream/master' into fetch_datasetsHind-M
2022-06-03Merge pull request #624 from albert-github/feature/bug_spellVincent Rouvreau
Spelling corrections
2022-05-24Merge remote-tracking branch 'upstream/master' into cech_optimizationHind-M
2022-05-24Merge pull request #623 from albert-github/feature/bug_gudhi_exampleVincent Rouvreau
Documentation: handling references to examples in a more transparent way
2022-05-23Documentation: handling references to examples in a more transparent wayalbert-github
Adding the other examples also with `gudhi_example_link`.
2022-05-23Update src/common/doc/installation.hVincent Rouvreau
2022-05-23Update src/common/doc/installation.hVincent Rouvreau
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2022-05-22Spelling correctionsalbert-github
A number of spelling corrections as reported by the codespell (see: https://github.com/codespell-project/codespell) program and lists. Some remarks: - not considered are grammatical errors - not considered are names in the code although there are a number that could be improved (like `childs` -> `children`) - in the documentation it could be made clearer what are variables and what is running text (e.g. by placing variables in running text between backticks) - some comments are in the French language, I think it would be better to have them in the English (United States version).
2022-05-22Documentation: handling references to examples in a more transparent wayalbert-github
In case we have the files`Bitmap_cubical_complex/Random_bitmap_cubical_complex.cpp` this will be linked to `_random_bitmap_cubical_complex_8cpp-example.html` and this is now hard coded. When the setting of `CASE_SENSE_NAMES` is set to `YES` the mapping is to `Random_bitmap_cubical_complex_8cpp-example.html` but the hard coded link is still to `_random_bitmap_cubical_complex_8cpp-example.html` so the link cannot be resolved (at runtime!). Same could happen when the `CASE_SENSE_NAMES` is left blank and the the value is system dependent. It is unlikely that this happens but ... By introducing the `ALIASES` `gudhi_example_link` this can be handled by doxygen in a more transparent way. Furthermore wit 2 examples there was a double `cpp` in the text part, this has been corrected as well Notre this solution supersedes #621 and maked #621 obsolete.
2022-05-20Documentation: Updating redirected linksalbert-github
Updating simple links in documentation sources for which we got during link checking: ``` This is a permanent redirect. The link should be updated. ```
2022-05-18Documentation: Doxygen warningsalbert-github
When running doxygen on the sources we get (a.o.) the following warnings: ``` .../gudhi-devel/src/Contraction/include/gudhi/Edge_contraction.h:214: warning: unbalanced grouping commands .../gudhi-devel/src/common/doc/examples.h:3: warning: the name 'Examples' supplied as the argument in the \file statement is not an input file error: bib file .../gudhi-devel/biblio/how_to_cite_gudhi.bib not found! .../gudhi-devel/src/common/doc/installation.h:271: warning: included file biblio/how_to_cite_gudhi.bib is not found. Check your EXAMPLE_PATH ``` This is corrected in the different files and in the settings in src/Doxyfile.in Also there are a number of settings that are obsolete like: ``` warning: Tag 'LATEX_SOURCE_CODE' at line 1835 of file '.../gudhi-devel/build_windows_fork/Doxyfile' has become obsolete. ``` This is corrected in the src/Doxyfile.in file
2022-05-17Missed reference found by VincentMarc Glisse
2022-05-02Merge remote-tracking branch 'upstream/master' into fetch_datasetsHind-M
2022-04-25Remove cech_complex_step_by_step example and MiniballHind-M
2022-03-24Update the main page of the docMarc Glisse
2022-02-10Boost 1.66.0 is now the minimal version as required from cgal 5.1 - Also ↵Vincent Rouvreau
remove useless include boost/version.h
2022-02-02Merge remote-tracking branch 'upstream/master' into cech_optimizationHind-M
2022-01-18Merge remote-tracking branch 'upstream/master' into fetch_datasetsHind-M
2021-12-13Fix benchmarks compilation errors in debug modeHind-M
2021-11-30Fix this boost deprecated includeVincent Rouvreau
2021-11-02Merge pull request #490 from Hind-M/generate_points_torus_pythonVincent Rouvreau
First version of points generation on torus
2021-11-02Merge master and fix conflictsVincent Rouvreau
2021-10-25Rename WITH_NETWORK option to WITH_GUDHI_REMOTE_TESTHind-M
2021-10-01Separate Minimal_enclosing_ball_radius class which uses CGAL from common ↵Hind-M
distance_functions.h file
2021-09-30Move minimal enclosing balls cache to Cech_complex.h instead of the blockerHind-M
Modify cech test to be more relevant regarding the current algorithm Do some cleaning
2021-09-27Document option WITH_NETWORK in installation manual and tests_strategyHind-M
Enable WITH_NETWORK option in some of the CI platforms (for a minimal testing)
2021-08-31Fix broken links. Add a tool to generate cpp example pageROUVREAU Vincent
2021-08-12Merge pull request #506 from VincentRouvreau/test_another_sphinx_themesVincent Rouvreau
Test another sphinx themes
2021-08-11Add test for sphere and torusHind-M
Fix numerical approximations inconsistencies with dim fraction exponent when generating points as grid on torus Add notes in doc regarding the torus versions use cases
2021-08-09First version of cech enhancementHind-M
2021-08-05mailing lists migration and rephrase contributions in installation guidesROUVREAU Vincent
2021-06-25update headers, conf.py for the new theme and bottleneck image to be smallerROUVREAU Vincent
2021-06-07Use boost pi and do not declare a gudhi one. cf. PR #480ROUVREAU Vincent
2021-06-07Replace 'uniform' flag of torus generation with 'sample' taking two possible ↵Hind-M
values: 'grid'(i.e uniform==True) or 'random' (i.e uniform==False)
2021-05-25Add a separator argument that goes with the ↵Hind-M
rips_complex_diagram_persistence_from_distance_matrix_file_example input file Specify explicitly the separator when using a specific input file
2021-05-12Merge from masterROUVREAU Vincent
2021-05-03Merge pull request #484 from VincentRouvreau/doxygen_improvementVincent Rouvreau
Doxygen documentation improvement
2021-04-27Doxygen documentation improvementROUVREAU Vincent
2021-04-27Remove make install target from python and rewrite documentation accordinglyROUVREAU Vincent
2021-04-23Use double_constants instead of templated constantsHind
Use the boost double_constants namespace in each function that needs two_pi
2021-04-23Get pi constant from boost instead of cmath (to be replaced with the C++20 ↵Hind
standard one eventually)
2021-04-22Replace hardcoded PI with M_PI from cmathHind
2021-04-22Add examples in doc and removes TBB link as not required by coxeterROUVREAU Vincent
2021-04-21cell complex is only for coxeter. eigen is required for coxeter, not cgalROUVREAU Vincent
2021-01-26Merge branch 'master' into coxeter_integrationROUVREAU Vincent
2020-11-01The example does not need CGAL/eigen anymore.Marc Glisse
I had done a search and replace without checking. I don't understand why there are "install" directives for examples...
2020-10-31s/kernel/distance/ for choose_n_farthest_points argumentMarc Glisse
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