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2017-03-20Rename barcode_persistence and diagram_persistence functionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2204 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f91e283fa6b6b02198ae28a44f41bd761c1c1f48
2017-03-19Add installation doc for witnessvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2201 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a531300cf80731e25b7d1337c79bd5bad0350bf
2017-03-17Add doc for Witnessvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2199 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b256e90ba831aaa268d42a8a390d89fbc73df10f
2017-03-15Merge gudhi_doc_2.0.0 header generated for GUDHI version 2.0.0 websitevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2191 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1222f9d972e4b866509fb92f79eff97ce804b3c8
2017-03-09Strong witness cythonizationvrouvrea
Biblio for doc simplification git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2184 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c191c6b79bb14f799d6cd08ac59a6b007a7874dc
2017-03-08New revision of witness and its documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2181 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5f002c1a58b2daff6c6826a2552d1c101f6810e1
2017-02-27Add TBB compilation support and documentationvrouvrea
Add Matplotlib results in GUDHI persistence graphical tools git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2112 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e9fe1111d3a7d82c004a390cee77197221f117ec
2017-02-24Modifications for MacOSX compilationvrouvrea
Add GUDHI web site eader and nice colors for the python doc git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2109 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20923bc3f304cfe96aec58030920c043400c3dd4
2017-02-23Doc review fix (sphinx typo)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2097 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e9e35a69ce1286a040348b2a49cd6093342b17fc
2017-02-22Fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2092 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df50df0878cdb5ae351b96b4b29e4c95940ae4b8
2017-02-22Code review fix (it was not the correct alpa complex example for persistence)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2091 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 990c071fc32bc88ba7bff1a1a1f4957e8923a0c6
2017-02-22Code review fix (revision numbers for python version)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2090 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a0ed2167cc2efdb5a08f91866ee071daa062b61
2017-02-22Fix code review (we are building Cython and not demos)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2089 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cfa8fb387b808ab846d61b974703988121507080
2017-02-16Remove pandas examples and use of OFF files interfaces to be more consistent ↵vrouvrea
(pandas interface is not that hard to be done) Add of distance matrix in Rips git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2081 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3a3b24f0824eed2710edb5bf17d120039973bf62
2017-02-03Modification for GUDHI version 2.0.0vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2060 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b91c810b51851f5ef98b09dd58ce0359003390d
2017-02-03Automatic examples documentation page generationvrouvrea
alpha_rips_persistence_bottleneck_distance example for python Add intervals_in_dim function for simplex tree git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2055 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 460fbe5db9f0c08776952106e729a21460bec36f
2017-02-02Doc updatevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2051 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 718698efa6fdb133b51923c449d97cd2365f75ae
2017-02-02Change doc html theme.vrouvrea
Change tables git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2047 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aaa29b8f610d506efc3762ad17c4fd768e74d399
2017-01-30Biblio fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2030 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b2cbbd0486b14d27230287cd97582285258eb74
2017-01-27Add bottleneck distancevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2019 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1320379f3d41ef4d11326c1aad1dd20469d3f4e0
2017-01-25Fix rips complex with the new interfacevrouvrea
Remove mini simplex tree Fix persistent cohomology doc - only simplex tree used Remove useless type definition in Cython C++ interfaces git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2003 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fff43192b00df1c70d59109a6c14932013992ff1
2016-12-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1909 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f4f6704025290938a46455fcc488fcb7642567e
2016-11-30Doc, examples and tests updates for tangentialvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1805 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 56d080f79a7a0c3b6eb3ed38b376e899cb17c8f9
2016-11-29Fix interface for Alpha complex and Tangential complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1801 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 995b53c7f65057ec155988b90f17299665eab4ae
2016-11-28Fix issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1795 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c4763818a5845eb884b245eca8c78ed60c1a28ca
2016-11-25Add of tangential complex docvrouvrea
Separate simplex tree from alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1788 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1cf4a35e0a099501eb1cb6b9809041dd1a1e2617
2016-11-23Add tangential complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1773 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b47285aafaa430c883c8fe5432ac667d6cedaf37
2016-10-20Merge last trunk modificationvrouvrea
Fix doc issue Still doc issue git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1739 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a99345f06e93a3525691699a6fe1505979e8e8e
2016-08-17Fix persistent_betti_numbers in Persistent_cohomology to make it work with ↵vrouvrea
cubical Cython examples renaming and fixing git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1439 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ab84ba3acd6241257f1787e29ac2e3ac005bbd80
2016-08-12List of todos in documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1438 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6bb84410384a2ade244262cb775ae2d1a30542ea
2016-08-12gudhi.so is more in ../.. but in ..vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1437 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cc66d57288e7559774ea30f38679e4cd172235f1
2016-08-12Move cython/src/* in cython/vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1436 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8f971ef16ef6df597d5d3667db0eecbca94233b2
2016-08-12cython/doc is no more used.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1434 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 54ac23cfa62777b6f3c54ecf5cd91d71f1dc10b2
2016-08-12move cython/doc/source in cython/src/docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1433 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9e9d17b611d04df874ab31a844c9549821bc16ee
2016-08-12Fix tests and documentationvrouvrea
Add OFF file read for Alpha complex Add PeriodicCubicalComplex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1432 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5a769f5402522fae801ebafee4d398d47d657be8
2016-08-12Add todo feature to list the todos in a page.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1431 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 89ea800ed4fb0b9e821a6c2650ffb79c09744325
2016-08-10Using ReST instead of LaTeX pseudo code for Alpha complex pseudo codevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1428 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a925b9001bc5fd0ef3873a30269df14899de178
2016-08-09Modifications for sphinx documentationvrouvrea
latex support (still pseudo code issue) doctest support for linux Cmake launches make html && make doctest to test the doc git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1427 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 58de6ec78d4368b99c9a81c9c229c4e7b075835a
2016-08-05Documentationvrouvrea
Examples renaming git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1425 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09bc66a795a4e4f5b2a484c607daa12b1e97b4de
2016-07-01Last sphinx modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1380 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7c7315dcf3fb211451948b67ceba499b6b7e98ca
2016-06-30Doc with sphinxvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1369 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ad4fe8083b2659af5f34c71fa02decf63403bce4
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