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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3212 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: ea6296547b67ad82f5983d4309493e9131da7dd0
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3074 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: d0842416dbf4ee1ff25a7421841efe8f097e5379
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3011 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: efdeef33160a5a0d8c033ff5b049ee6907d84671
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3004 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 664770dcae1726b94d4a486c376d1d2f744371eb
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/set_dimension_mechanism_precision@2918 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 390839c0f172993f6117746d08c5a22c00778c5f
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Comment some bad code
Try to cythonize rips from correlation matrix
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@2858 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 3b9bcdfdeae247ed5486e20cb62f2812fdd14b0d
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2811 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 2a37c02ca51d0df28a981207db6ecc1bd0991ffa
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with correlation matrix
Add examples for doxygen
Cythonization of rips correlation matrix
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@2727 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 8aae33839fa27f9d26897e625904671b2c05e0e7
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_remove_useless_global_filtration@2721 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 76b127e54d9511b70294ab48336ca6dbd6fdb1d6
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2689 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: c18c6316d51f476a795b59c8b870db1aaf0b4591
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_memory_leak_fix@2686 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: a8fd65accb5be293e9d3f5fe411225745cb76b0b
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persistence file reader Python interface
persistence_graphical_tools improvement (max_plots and max_barcodes, and from a persistence file)
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2604 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: db80333d4f34151be0c32024af597d90d221a97f
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2596 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 77c093029d3e2518260ce59705110df3fbfe11e3
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Add confidence band in plot_persistence_diagram
Cythonization of read_lower_triangular_matrix_from_csv_file and read_persistence_intervals functions
Add Python tests of read functions
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2590 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 522ec31e9ad3a9a688875612d246114704b8c74e
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2333 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 23035b47dd95c008feb546d7ffb17b96cd7edcfa
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Fix cpplints
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2331 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: bc5609c2df490db50e82b56a5e6d899dc6370182
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2329 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: ba0fbf37ea8108d8c3ca21162d7cb815a92336f7
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2300 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 512403fe0838fb2691e0af94c55772bff942b740
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2277 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 2df390d8a87130a01fd3cae151e5a057ab85e049
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Remove useless initialize_filtration
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2276 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: eed1a67e2f83e3a1945cc24b11454ed1ef024ba6
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2250 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 953403f208094ca4145d837f736bfc939efa9223
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Use a named constant instead of -1 to denote a random value.
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2245 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 166dff85c74ab2c13bfd788f226d1d8a15d1d1b9
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2232 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: ac02d5dd3b2aedd4795f775c228fe5ef7e1b3320
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2229 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 41a958b1be51ac938b45b384cde7940a85e9dea0
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2221 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: fff57c25d175a6aed355efeb449f94a1af2249b3
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2217 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 1e426a8cbcba192a50b05b5cc7fa4a0fd50d8c9b
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Landmarks initialization were not correct
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2213 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: ab7e0adb6f36b2ccfd52a8c652c1ea35258a7aa1
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Rename Complex_tree typedef with Complex
Typo in Rips doc for csv files for distance matrices
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2211 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: a6be0ce66ef3c2c71ad43b328cebd673862a76d2
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2210 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: c88576269982d87dd2dfd4003811628fee58dc2e
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2207 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 3471adcb19df0859b5d905f5c5ba7e6e11ba2613
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2203 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 55cf020d2a7989dc4e7125bcf6f91443aad4dda1
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2195 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: de15e40b8f0efcc59b2f07ffb5f5d59ccab8d51c
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Add OFF reader interfaces (required by Euclidean witness complex)
Add Euclidean_witness_complex
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2186 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 4d780f05c3409bea47a81e4377dbaf509b9e718c
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Biblio for doc simplification
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2184 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: c191c6b79bb14f799d6cd08ac59a6b007a7874dc
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2181 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 5f002c1a58b2daff6c6826a2552d1c101f6810e1
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(pandas interface is not that hard to be done)
Add of distance matrix in Rips
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2081 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 3a3b24f0824eed2710edb5bf17d120039973bf62
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2019 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 1320379f3d41ef4d11326c1aad1dd20469d3f4e0
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Remove mini simplex tree
Fix persistent cohomology doc - only simplex tree used
Remove useless type definition in Cython C++ interfaces
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2003 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: fff43192b00df1c70d59109a6c14932013992ff1
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unitary tested
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1816 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 170f14ffcf009ebe1169df90a4e088441eaad13f
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1814 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 696c9b39cb05e69e2d9c2a3ac3f5400c7e518691
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add Py test for subsampling
Add choose_n_furthest from off file
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1810 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: a23746a3dd427edc958b375f9f0ac4b4d2901fcb
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Remove deref cyton import
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1809 636b058d-ea47-450e-bf9e-a15bfbe3eedb
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1805 636b058d-ea47-450e-bf9e-a15bfbe3eedb
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1801 636b058d-ea47-450e-bf9e-a15bfbe3eedb
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1796 636b058d-ea47-450e-bf9e-a15bfbe3eedb
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1795 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: c4763818a5845eb884b245eca8c78ed60c1a28ca
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Separate simplex tree from alpha complex
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1788 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 1cf4a35e0a099501eb1cb6b9809041dd1a1e2617
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git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1773 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: b47285aafaa430c883c8fe5432ac667d6cedaf37
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Fix doc issue
Still doc issue
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1739 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 0a99345f06e93a3525691699a6fe1505979e8e8e
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Fix example and tests
New persistence constructor for cubical to increase max_persistence_dim (and only for cubical, periodic or not)
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1442 636b058d-ea47-450e-bf9e-a15bfbe3eedb
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