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2017-03-17Euclidean strong witness complex cytonizationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2195 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: de15e40b8f0efcc59b2f07ffb5f5d59ccab8d51c
2017-03-14Add Windows and CGAL_HEADER_ONLY cythonization supportvrouvrea
Add OFF reader interfaces (required by Euclidean witness complex) Add Euclidean_witness_complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2186 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4d780f05c3409bea47a81e4377dbaf509b9e718c
2017-02-16Remove pandas examples and use of OFF files interfaces to be more consistent ↵vrouvrea
(pandas interface is not that hard to be done) Add of distance matrix in Rips git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2081 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3a3b24f0824eed2710edb5bf17d120039973bf62
2017-01-27Add bottleneck distancevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2019 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1320379f3d41ef4d11326c1aad1dd20469d3f4e0
2017-01-25Fix rips complex with the new interfacevrouvrea
Remove mini simplex tree Fix persistent cohomology doc - only simplex tree used Remove useless type definition in Cython C++ interfaces git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2003 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fff43192b00df1c70d59109a6c14932013992ff1
2016-12-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1909 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f4f6704025290938a46455fcc488fcb7642567e
2016-12-03sparsify point set cythonizationvrouvrea
unitary tested git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1816 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 170f14ffcf009ebe1169df90a4e088441eaad13f
2016-12-02pick_n_random_points cythonizationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1814 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 696c9b39cb05e69e2d9c2a3ac3f5400c7e518691
2016-12-01Merge last trunk modificationsvrouvrea
add Py test for subsampling Add choose_n_furthest from off file git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1810 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a23746a3dd427edc958b375f9f0ac4b4d2901fcb
2016-11-30Doc, examples and tests updates for tangentialvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1805 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 56d080f79a7a0c3b6eb3ed38b376e899cb17c8f9
2016-11-29Fix interface for Alpha complex and Tangential complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1801 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 995b53c7f65057ec155988b90f17299665eab4ae
2016-11-25Add of tangential complex docvrouvrea
Separate simplex tree from alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1788 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1cf4a35e0a099501eb1cb6b9809041dd1a1e2617
2016-08-18Move pandas files points into data/pandasvrouvrea
Fix example and tests New persistence constructor for cubical to increase max_persistence_dim (and only for cubical, periodic or not) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1442 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 243a843a65a82b9d3d8d564aa906c0a17eda176a
2016-06-28Modify FindGMPXX.cmake to set directoryvrouvrea
Cython CmakeLists.txt for compilation and tests (still export PYTHONPATH to be solved) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1349 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cc46d7ef7c34ce2bc0408eb612e5ab9241b4c9c0
2016-06-23Pytest unitary testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1333 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0f0b284583267400574c2c2f644d5a99dfb6032e
2016-06-23Cubical complex unitary testsvrouvrea
Using pytest because of unittest bug on __function in cython git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bbb829104ddb14173cdb066c40e73273fac0c720
2016-06-16Add witness complex unitary testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1309 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d5bb6ba84a2cca258d58a200c65e11cd834b6b80
2016-06-06bar code persistence toolvrouvrea
Copyright modification git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1251 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff7a8baeffbcafe6d074786b6a7956d815edd21b
2016-05-31Rename files using PEP8 recommendationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1226 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4fb27e76a494266c9f79f411c03633f68e2da525
2016-05-25PEP8 conformityvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1195 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8d2e24e07694508853feb677e5fd2294a663a2d5
2016-05-19Separate Mini_simplex_tree from Simplex_treevrouvrea
persistence function for everybody git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1181 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: db3a6446593acd319d15315f63eb9568447db9da
2016-05-17Separate Rips_complex from Simplex_treevrouvrea
Add Alpha_complex_UT git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1179 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae209f9e070dd3e27c8eb93f0a1edf2842e9c561
2016-05-10Add examples and tests for remove_maximal_leafvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1156 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7b3884709a74e19101b23f30af125f7b3365de74
2016-05-09Directory re-organization for Gudhi modulesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1154 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: acfc931aee37c65ee2828e3873e9727b308e5d76
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