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2017-01-30Biblio fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2030 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b2cbbd0486b14d27230287cd97582285258eb74
2017-01-27Add bottleneck distancevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2019 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1320379f3d41ef4d11326c1aad1dd20469d3f4e0
2017-01-26Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2013 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 28547c36fb65eea6cf30091678e132763c3d0507
2017-01-25Fix rips complex with the new interfacevrouvrea
Remove mini simplex tree Fix persistent cohomology doc - only simplex tree used Remove useless type definition in Cython C++ interfaces git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2003 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fff43192b00df1c70d59109a6c14932013992ff1
2016-12-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1909 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f4f6704025290938a46455fcc488fcb7642567e
2016-12-03sparsify point set cythonizationvrouvrea
unitary tested git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1816 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 170f14ffcf009ebe1169df90a4e088441eaad13f
2016-12-02pick_n_random_points cythonizationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1814 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 696c9b39cb05e69e2d9c2a3ac3f5400c7e518691
2016-12-01Merge last trunk modificationsvrouvrea
add Py test for subsampling Add choose_n_furthest from off file git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1810 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a23746a3dd427edc958b375f9f0ac4b4d2901fcb
2016-12-01Add Subsampling cpp interface and cythonvrouvrea
Remove deref cyton import git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1809 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2dc0469d2401e0c99e879c064a0f608c8ba78ed6
2016-11-30Doc, examples and tests updates for tangentialvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1805 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 56d080f79a7a0c3b6eb3ed38b376e899cb17c8f9
2016-11-29Fix interface for Alpha complex and Tangential complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1801 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 995b53c7f65057ec155988b90f17299665eab4ae
2016-11-28Cythonize Tangentialvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1796 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4f9968db1b5b63f0970abcb74d4cb7a5a105b2fa
2016-11-28Fix issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1795 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c4763818a5845eb884b245eca8c78ed60c1a28ca
2016-11-25Add of tangential complex docvrouvrea
Separate simplex tree from alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1788 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1cf4a35e0a099501eb1cb6b9809041dd1a1e2617
2016-11-23Add tangential complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1773 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b47285aafaa430c883c8fe5432ac667d6cedaf37
2016-10-20Merge last trunk modificationvrouvrea
Fix doc issue Still doc issue git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1739 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a99345f06e93a3525691699a6fe1505979e8e8e
2016-08-18Move pandas files points into data/pandasvrouvrea
Fix example and tests New persistence constructor for cubical to increase max_persistence_dim (and only for cubical, periodic or not) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1442 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 243a843a65a82b9d3d8d564aa906c0a17eda176a
2016-08-17Fix persistent_betti_numbers in Persistent_cohomology to make it work with ↵vrouvrea
cubical Cython examples renaming and fixing git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1439 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ab84ba3acd6241257f1787e29ac2e3ac005bbd80
2016-08-12List of todos in documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1438 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6bb84410384a2ade244262cb775ae2d1a30542ea
2016-08-12gudhi.so is more in ../.. but in ..vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1437 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cc66d57288e7559774ea30f38679e4cd172235f1
2016-08-12Move cython/src/* in cython/vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1436 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8f971ef16ef6df597d5d3667db0eecbca94233b2
2016-08-12move cython/src/cpp into cython/src/includevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1435 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e437925f01965216b672376c1bba7709b78c8b0
2016-08-12cython/doc is no more used.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1434 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 54ac23cfa62777b6f3c54ecf5cd91d71f1dc10b2
2016-08-12move cython/doc/source in cython/src/docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1433 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9e9d17b611d04df874ab31a844c9549821bc16ee
2016-08-12Fix tests and documentationvrouvrea
Add OFF file read for Alpha complex Add PeriodicCubicalComplex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1432 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5a769f5402522fae801ebafee4d398d47d657be8
2016-08-12Add todo feature to list the todos in a page.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1431 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 89ea800ed4fb0b9e821a6c2650ffb79c09744325
2016-08-12Remove examples and add file entries for sphinx documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1430 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 577beecd0ea2b19db95dec94590b8bb1834913eb
2016-08-10Using ReST instead of LaTeX pseudo code for Alpha complex pseudo codevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1428 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a925b9001bc5fd0ef3873a30269df14899de178
2016-08-09Modifications for sphinx documentationvrouvrea
latex support (still pseudo code issue) doctest support for linux Cmake launches make html && make doctest to test the doc git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1427 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 58de6ec78d4368b99c9a81c9c229c4e7b075835a
2016-08-05Documentationvrouvrea
Examples renaming git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1425 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09bc66a795a4e4f5b2a484c607daa12b1e97b4de
2016-08-03Fix documentationvrouvrea
Rename alpha_complex_example git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1399 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8eb9f26f4638bbccfa2103c5808d2d59d9f4da01
2016-07-01Last sphinx modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1380 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7c7315dcf3fb211451948b67ceba499b6b7e98ca
2016-06-30Doc with sphinxvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1369 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ad4fe8083b2659af5f34c71fa02decf63403bce4
2016-06-30CMake to configure PYTHONPATH environment variablevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1359 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3b28a1b1ef2bb160fe68b2511f095822ffdcb6e5
2016-06-28Modify FindGMPXX.cmake to set directoryvrouvrea
Cython CmakeLists.txt for compilation and tests (still export PYTHONPATH to be solved) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1349 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cc46d7ef7c34ce2bc0408eb612e5ab9241b4c9c0
2016-06-23Pytest unitary testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1333 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0f0b284583267400574c2c2f644d5a99dfb6032e
2016-06-23Cubical complex unitary testsvrouvrea
Using pytest because of unittest bug on __function in cython git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bbb829104ddb14173cdb066c40e73273fac0c720
2016-06-16Add witness complex unitary testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1309 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d5bb6ba84a2cca258d58a200c65e11cd834b6b80
2016-06-16Revert relaxed witness complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1308 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 526b0466b3d7d4a8ad2507e5199c15756099125e
2016-06-10Add relaxed witness cytonizationvrouvrea
Add 2000_random_points_on_3D_Torus.csv for rips_complex_from_file_example.py and witness_complex_from_file_example.py git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1273 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 80469ca5fb20f21d87fd2816e3f212280ac45caf
2016-06-09Catch if file does not existvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1267 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b5490aa143b0303da6a92fcc7f7df7656101592a
2016-06-09Add cubical_complex_from_perseus_file_example and its required interfacesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1266 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ba6c468f62e86d8b07b5e9922da3370348708144
2016-06-09Witness complex cythonizationvrouvrea
Review of graphical tools git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1264 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 35d1204190e4324cb9f9e4f8679c13c8ad080f51
2016-06-08Add example rips_complex_from_file_example.py to compare with alpha complex.vrouvrea
Modify existing examples. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1260 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df5ac5ac6ad0427d9f943a632b36802581043760
2016-06-08Persistence diagram first version working with ↵vrouvrea
alpha_complex_from_file_example.py Comment graphical tools in example Makefile section git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1259 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b315b7c414bd0e2b269dcc2fbcae645a025335f1
2016-06-07Add documentation for cubical complex. Sphinx style.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1258 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df3e503c5c31b7bd18409f8a052f08926997611a
2016-06-07Cython documentation. Sphinx style.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1254 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ed09c0f54fda05d4147f5680db6f626e9a5d1a92
2016-06-06bar code persistence toolvrouvrea
Copyright modification git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1251 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff7a8baeffbcafe6d074786b6a7956d815edd21b
2016-06-01Makefile commit forgottenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1236 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9c39c03b749147cd20b26ab44351cfa8063da62b
2016-06-01Add interfaces with pandas, numpy and matplotlibvrouvrea
new examples : rips_persistence_diagram.py, random_cubical_complex_example & alpha_complex_from_file_example new data files for alpha_complex_from_file_example git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1235 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 901cc5eb791633f7bfcd86c0b7b8733cb6eb054c
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