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2017-02-23Doc review fix (sphinx typo)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2097 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e9e35a69ce1286a040348b2a49cd6093342b17fc
2017-02-22Fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2093 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 91c0d0e66cc12c305dae9e28454a7b9907c1c361
2017-02-22Fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2092 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df50df0878cdb5ae351b96b4b29e4c95940ae4b8
2017-02-22Code review fix (it was not the correct alpa complex example for persistence)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2091 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 990c071fc32bc88ba7bff1a1a1f4957e8923a0c6
2017-02-22Code review fix (revision numbers for python version)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2090 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a0ed2167cc2efdb5a08f91866ee071daa062b61
2017-02-22Fix code review (we are building Cython and not demos)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2089 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cfa8fb387b808ab846d61b974703988121507080
2017-02-16Do not use args default value set to []vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2082 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 107892dbf3afcf8d46c80f49470e350f57d0090e
2017-02-16Remove pandas examples and use of OFF files interfaces to be more consistent ↵vrouvrea
(pandas interface is not that hard to be done) Add of distance matrix in Rips git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2081 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3a3b24f0824eed2710edb5bf17d120039973bf62
2017-02-03Modification for GUDHI version 2.0.0vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2060 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b91c810b51851f5ef98b09dd58ce0359003390d
2017-02-03intervals in dimension documentation typovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2057 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 471efb27b0b669a0112b90b44b32e6117bc772d4
2017-02-03Add intervals in dimension function in cubical alsovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2056 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c1fd5ee1283204c7bef96c5f6245e982657dc1cb
2017-02-03Automatic examples documentation page generationvrouvrea
alpha_rips_persistence_bottleneck_distance example for python Add intervals_in_dim function for simplex tree git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2055 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 460fbe5db9f0c08776952106e729a21460bec36f
2017-02-02Doc updatevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2051 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 718698efa6fdb133b51923c449d97cd2365f75ae
2017-02-02Change doc html theme.vrouvrea
Change tables git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2047 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aaa29b8f610d506efc3762ad17c4fd768e74d399
2017-01-30Biblio fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2030 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b2cbbd0486b14d27230287cd97582285258eb74
2017-01-27Add bottleneck distancevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2019 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1320379f3d41ef4d11326c1aad1dd20469d3f4e0
2017-01-26Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2013 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 28547c36fb65eea6cf30091678e132763c3d0507
2017-01-25Fix rips complex with the new interfacevrouvrea
Remove mini simplex tree Fix persistent cohomology doc - only simplex tree used Remove useless type definition in Cython C++ interfaces git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2003 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fff43192b00df1c70d59109a6c14932013992ff1
2016-12-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1909 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f4f6704025290938a46455fcc488fcb7642567e
2016-12-03sparsify point set cythonizationvrouvrea
unitary tested git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1816 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 170f14ffcf009ebe1169df90a4e088441eaad13f
2016-12-02pick_n_random_points cythonizationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1814 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 696c9b39cb05e69e2d9c2a3ac3f5400c7e518691
2016-12-01Merge last trunk modificationsvrouvrea
add Py test for subsampling Add choose_n_furthest from off file git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1810 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a23746a3dd427edc958b375f9f0ac4b4d2901fcb
2016-12-01Add Subsampling cpp interface and cythonvrouvrea
Remove deref cyton import git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1809 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2dc0469d2401e0c99e879c064a0f608c8ba78ed6
2016-11-30Doc, examples and tests updates for tangentialvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1805 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 56d080f79a7a0c3b6eb3ed38b376e899cb17c8f9
2016-11-29Fix interface for Alpha complex and Tangential complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1801 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 995b53c7f65057ec155988b90f17299665eab4ae
2016-11-28Cythonize Tangentialvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1796 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4f9968db1b5b63f0970abcb74d4cb7a5a105b2fa
2016-11-28Fix issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1795 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c4763818a5845eb884b245eca8c78ed60c1a28ca
2016-11-25Add of tangential complex docvrouvrea
Separate simplex tree from alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1788 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1cf4a35e0a099501eb1cb6b9809041dd1a1e2617
2016-11-23Add tangential complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1773 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b47285aafaa430c883c8fe5432ac667d6cedaf37
2016-10-20Merge last trunk modificationvrouvrea
Fix doc issue Still doc issue git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1739 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a99345f06e93a3525691699a6fe1505979e8e8e
2016-08-18Move pandas files points into data/pandasvrouvrea
Fix example and tests New persistence constructor for cubical to increase max_persistence_dim (and only for cubical, periodic or not) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1442 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 243a843a65a82b9d3d8d564aa906c0a17eda176a
2016-08-17Fix persistent_betti_numbers in Persistent_cohomology to make it work with ↵vrouvrea
cubical Cython examples renaming and fixing git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1439 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ab84ba3acd6241257f1787e29ac2e3ac005bbd80
2016-08-12List of todos in documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1438 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6bb84410384a2ade244262cb775ae2d1a30542ea
2016-08-12gudhi.so is more in ../.. but in ..vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1437 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cc66d57288e7559774ea30f38679e4cd172235f1
2016-08-12Move cython/src/* in cython/vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1436 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8f971ef16ef6df597d5d3667db0eecbca94233b2
2016-08-12move cython/src/cpp into cython/src/includevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1435 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e437925f01965216b672376c1bba7709b78c8b0
2016-08-12cython/doc is no more used.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1434 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 54ac23cfa62777b6f3c54ecf5cd91d71f1dc10b2
2016-08-12move cython/doc/source in cython/src/docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1433 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9e9d17b611d04df874ab31a844c9549821bc16ee
2016-08-12Fix tests and documentationvrouvrea
Add OFF file read for Alpha complex Add PeriodicCubicalComplex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1432 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5a769f5402522fae801ebafee4d398d47d657be8
2016-08-12Add todo feature to list the todos in a page.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1431 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 89ea800ed4fb0b9e821a6c2650ffb79c09744325
2016-08-12Remove examples and add file entries for sphinx documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1430 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 577beecd0ea2b19db95dec94590b8bb1834913eb
2016-08-10Using ReST instead of LaTeX pseudo code for Alpha complex pseudo codevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1428 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a925b9001bc5fd0ef3873a30269df14899de178
2016-08-09Modifications for sphinx documentationvrouvrea
latex support (still pseudo code issue) doctest support for linux Cmake launches make html && make doctest to test the doc git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1427 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 58de6ec78d4368b99c9a81c9c229c4e7b075835a
2016-08-05Documentationvrouvrea
Examples renaming git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1425 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09bc66a795a4e4f5b2a484c607daa12b1e97b4de
2016-08-03Fix documentationvrouvrea
Rename alpha_complex_example git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1399 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8eb9f26f4638bbccfa2103c5808d2d59d9f4da01
2016-07-01Last sphinx modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1380 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7c7315dcf3fb211451948b67ceba499b6b7e98ca
2016-06-30Doc with sphinxvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1369 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ad4fe8083b2659af5f34c71fa02decf63403bce4
2016-06-30CMake to configure PYTHONPATH environment variablevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1359 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3b28a1b1ef2bb160fe68b2511f095822ffdcb6e5
2016-06-28Modify FindGMPXX.cmake to set directoryvrouvrea
Cython CmakeLists.txt for compilation and tests (still export PYTHONPATH to be solved) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1349 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cc46d7ef7c34ce2bc0408eb612e5ab9241b4c9c0
2016-06-23Pytest unitary testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1333 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0f0b284583267400574c2c2f644d5a99dfb6032e
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