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2020-04-14Doc improvementsMarc Glisse
2020-04-13Tweak to detect fit_transformMarc Glisse
2020-04-13Remove left-over codeMarc Glisse
eagerpy is only used with enable_autodiff
2020-04-13Generalize enable_autodiff to more implementationsMarc Glisse
Still limited to L^p
2020-04-13Fix NaN gradient with pytorchMarc Glisse
2020-04-13Small autodiff tweaksMarc Glisse
2020-04-13enable_autodiff with keopsMarc Glisse
This doesn't seem like the best way to handle it, we may want to handle it like a wrapper that gets the indices from knn (whatever backend) and then computes the distances.
2020-04-12Parallelize the "precomputed" case of knnMarc Glisse
It is supposed to be possible to compile numpy with openmp, but it looks like it isn't done in any of the usual packages. It may be possible to refactor that code so there is less redundancy.
2020-04-11Use longer namesMarc Glisse
2020-03-30BiblioMarc Glisse
2020-03-28Default param of 2 for DTMMarc Glisse
2020-03-28Optional sort_resultsMarc Glisse
2020-03-28CommentMarc Glisse
2020-03-28docMarc Glisse
2020-03-28Doc tweaks, default DTM exponentMarc Glisse
2020-03-27docMarc Glisse
2020-03-27Improve coverageMarc Glisse
2020-03-26clean-up use of "implementation"Marc Glisse
2020-03-26licenseMarc Glisse
2020-03-26cmakeMarc Glisse
2020-03-22Merge master and fix conflictsROUVREAU Vincent
2020-03-17Merge pull request #236 from tlacombe/optimal_matching_wassersteinMarc Glisse
optimal matching in Wasserstein distance (pot) (Fix #203)
2020-03-16Merge pull request #211 from VincentRouvreau/iterator_over_simplex_treeVincent Rouvreau
Iterator over simplex tree
2020-03-16Merge pull request #214 from takeshimeonerespect/masterMarc Glisse
About adding timedelay for feature engineering
2020-03-16Add get_simplices method - contrary to get_filtration method, sort is not ↵ROUVREAU Vincent
performed
2020-03-13Merge branch 'master' into iterator_over_simplex_treeROUVREAU Vincent
2020-03-13Merge remote-tracking branch 'upstream/master' into optimal_matching_wassersteinMarc Glisse
2020-03-10fix indentation in wassersteintlacombe
2020-03-10Update src/python/gudhi/wasserstein.pyThéo Lacombe
Co-Authored-By: Marc Glisse <marc.glisse@inria.fr>
2020-03-10correction of typo in the doctlacombe
2020-03-10changed output of matching as a (n x 2) array, adapted tests and doctlacombe
2020-03-10removed _clean_match and changed matching format, it is now a (n x 2) numpy ↵tlacombe
array
2020-03-10removed P[P < 0.5] thresholding ; as it shouldn't happen anymore.tlacombe
2020-03-10Merge pull request #227 from tlacombe/improving_plot_rendering_pythonVincent Rouvreau
Global improvement of rendering with Python tools and fix #27
2020-03-09removed infty line plot in plot_diagram if no pts at inftytlacombe
2020-03-06set greyblock to False by default in densitytlacombe
2020-03-05completed as...tlacombe
2020-03-05updated doctlacombe
2020-03-05Merge branch 'master' into print_warnings_to_stderrROUVREAU Vincent
2020-03-05Update src/python/gudhi/persistence_graphical_tools.pyThéo Lacombe
Co-Authored-By: Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com>
2020-03-03updated doc and example handling Nx2 numpy arraystlacombe
2020-03-03handle numpy array, should now adapt the doctlacombe
2020-03-03update wasserstein distance with pot so that it can return optimal matching now!tlacombe
2020-03-02Merge branch 'master' into iterator_over_simplex_treeROUVREAU Vincent
2020-02-26Fix #229 incomplete citation in nerve_GIC python documentationROUVREAU Vincent
2020-02-26Merge branch 'master' into iterator_over_simplex_treeROUVREAU Vincent
2020-02-25solved scale issue and removed title/aspect as functions return axtlacombe
2020-02-25Revert "Global improvement of rendering with Python tools"tlacombe
This reverts commit 34e1ae726e27fdd7c41f6d80d8ed7f6504dc3a0d.
2020-02-25Update timedelay.pymtakenouchi
2020-02-25Update timedelay.pymtakenouchi
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