summaryrefslogtreecommitdiff
path: root/src/python/gudhi
AgeCommit message (Collapse)Author
2021-10-07Move warnings import to the beginning of knn.py fileHind-M
Use isfinite instead of isinf and isnan Use catch_warnings context manager instead of "always" with simplefilter
2021-09-08Set the warning filter to "always"Hind-M
Add test for dtm overflow warning
2021-08-30Fix dtm and knn failing testsHind-M
2021-08-27Fix issue #314Hind-M
Add overflow and nan warnings in knn when using torch and hnswlib
2021-07-27Remove unnecessary checks for primalityHind-M
Document homology_coeff_field values in cubical
2021-07-12Limit homology_coeff_field value to max allowedHind-M
Add test with first prime outside the allowed range
2021-07-01Move primality test to Field_Zp::initHind-M
Throw exception when not prime Add tests
2021-05-28Merge pull request #481 from Hind-M/generate_points_sphere_pythonVincent Rouvreau
Add random points generator on sphere in python, with an example
2021-05-28Merge pull request #365 from tlacombe/essential_part_in_wassersteinVincent Rouvreau
Essential part in wasserstein
2021-05-26Change some output messages and documentation to me more explicitHind-M
2021-05-10Rename dim to ambient_dim for sphere (to be consistent with dim in torus)Hind Montassif
2021-05-05Add __init__ files at every level in modulesHind Montassif
Remove last modules level and add sample type argument Rename num_points to n_samples
2021-05-04Set Simplex_tree_interface_full_featured constructor name (Simplex_tree) to ↵Hind Montassif
the class name
2021-04-28Add points (dataset type) before the underlying model (sphere) as a moduleHind
2021-04-28enhancing the doc2tlacombe
2021-04-28enhancing the doctlacombe
2021-04-27Rename and reorganize point generators moduleHind
2021-04-27changed infty to inf in doctlacombe
2021-04-27now consider (inf,inf) as belonging to the diagonal ; more teststlacombe
2021-04-27Merge branch 'essential_part_in_wasserstein' of ↵tlacombe
https://github.com/tlacombe/gudhi-devel into essential_part_in_wasserstein merging typo correction
2021-04-27Typo - Update src/python/gudhi/wasserstein/wasserstein.pyThéo Lacombe
Co-authored-by: Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com>
2021-04-27Typo correction - Update src/python/gudhi/wasserstein/wasserstein.pyThéo Lacombe
Co-authored-by: Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com>
2021-04-26Replace assert with GUDHI_CHECKHind
Make the function non-template Change typing and casting
2021-04-23Make adjustments according to the received reviewsHind
2021-04-22Add random points generator on sphere in python, with an exampleHind
2021-04-21typo correctedtlacombe
2021-04-19Merge pull request #472 from mglisse/colorVincent Rouvreau
Fix contradictory color
2021-04-16Merge pull request #471 from Hind-M/cython_set_language_levelVincent Rouvreau
Set Cython language level in setup.py to remove warning, and fix python3 implicit relative imports disability
2021-04-15Name the argument n_neighbors of NearestNeighborsMarc Glisse
It seems that it has had the same name for a while, so this shouldn't break anything. sklearn/utils/validation.py:70: FutureWarning: Pass n_neighbors=3 as keyword args. From version 1.0 (renaming of 0.25) passing these as positional arguments will result in an error
2021-04-15Fix contradictory colorMarc Glisse
2021-04-15Set Cython language level to remove warningHind
2021-04-12added warning when cost is infty and matching is Nonetlacombe
2021-04-12handle essential parts testtlacombe
2021-04-12improved essential part and enable autodiff managementtlacombe
2021-04-12change name _offdiag to _finite_parttlacombe
2021-04-12merge upstream/master into essential partstlacombe
2021-01-11Ignore doctest for atol doc. Rewrite unitary test for atol doc. To be ↵ROUVREAU Vincent
synchronized
2021-01-11skip doctest (but run them)ROUVREAU Vincent
2021-01-11Remove sphinx doc test for atol as points order can be inverted and add it ↵ROUVREAU Vincent
in a UT but sorted
2020-12-19Docstring improvements in RipsComplexUmberto Lupo
- create_simplex_tree method referred to the Delaunay triangulation instead of the flag complex - "rips" was not capitalized - "double" was used in the docs but only "float" (which has double precision) is a Python type
2020-12-14Fix sphinx warning and doc identationROUVREAU Vincent
2020-12-12Merge pull request #436 from VincentRouvreau/ci_without_cgalVincent Rouvreau
Add build and tests wo cgal and eigen and wo cgal
2020-12-11code review: throw an eception if collapse_edges when no Eigen3ROUVREAU Vincent
2020-12-11code review: GUDHI_USE_EIGEN3 generated by CMake in __init__.py as suggested ↵ROUVREAU Vincent
and roll back the other solution
2020-12-10Merge pull request #408 from mglisse/subsampleMarc Glisse
Clean-ups in subsampling
2020-12-09Fix #388ROUVREAU Vincent
2020-12-08Fix #388 for the tests to passROUVREAU Vincent
2020-11-18merge master and resolve conflictsROUVREAU Vincent
2020-11-09Don't test the equality case in sparsify_point_set. sqrt.Marc Glisse
2020-11-07Swap clip with int conversionMarc Glisse
This allows correct handling of infinite values.