Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-05-20 | Merge pull request #313 from mglisse/dtmdensity | Marc Glisse | |
DTM density estimator | |||
2020-05-19 | Test with explicit weights | Marc Glisse | |
and remove duplicated assignment | |||
2020-05-18 | Infer k when we pass the distances to the nearest neighbors | Marc Glisse | |
2020-05-15 | Merge pull request #295 from yuichi-ike/weighted_rips | Vincent Rouvreau | |
Weighted rips | |||
2020-05-15 | Merge pull request #204 from MathieuCarriere/generators | Vincent Rouvreau | |
Generators | |||
2020-05-12 | More test | Marc Glisse | |
2020-05-12 | test + reformat | Marc Glisse | |
2020-05-12 | reference and comments added | yuichi-ike | |
2020-05-11 | document and comments added, weights modified | yuichi-ike | |
2020-04-30 | Merge pull request #285 from mglisse/wass-autodiff | Marc Glisse | |
Automatic differentiation for Wasserstein distance | |||
2020-04-29 | fix conflict | MathieuCarriere | |
2020-04-29 | Merge remote-tracking branch 'origin/master' into gen2 | Marc Glisse | |
2020-04-28 | update output | MathieuCarriere | |
2020-04-28 | fix conflict | MathieuCarriere | |
2020-04-28 | filtration value doubled, comments modified | yuichi-ike | |
2020-04-22 | Reduce the probability of failure of test_dtm | Marc Glisse | |
It is expected that hnsw sometimes misses one neighbor, which has an impact on the DTM, especially if the number of neighbors considered is low. | |||
2020-04-22 | Test value of computed gradient | Marc Glisse | |
2020-04-20 | Merge remote-tracking branch 'origin/master' into wass-autodiff | Marc Glisse | |
2020-04-20 | Merge pull request #265 from mglisse/dtm | Marc Glisse | |
DTM | |||
2020-04-20 | Explicitly pass sort_results=True on some tests | Marc Glisse | |
2020-04-20 | Reintroduce _proj_on_diag, with a unit test | Marc Glisse | |
2020-04-19 | Test comparison with persistence_pairs() | Marc Glisse | |
2020-04-19 | Drop redundant test | Marc Glisse | |
torch.isnan(None) raises an exception anyway | |||
2020-04-19 | Test gradient | Marc Glisse | |
2020-04-18 | enable_autodiff for POT wasserstein_distance | Marc Glisse | |
2020-04-17 | Merge remote-tracking branch 'origin/master' into filtration | Marc Glisse | |
2020-04-14 | Check that the gradient is not NaN | Marc Glisse | |
This can easily happen with pytorch, and there is special code to avoid it. | |||
2020-04-14 | Merge remote-tracking branch 'origin/master' into dtm | Marc Glisse | |
2020-04-14 | More testing | Marc Glisse | |
2020-04-13 | enable_autodiff with keops | Marc Glisse | |
This doesn't seem like the best way to handle it, we may want to handle it like a wrapper that gets the indices from knn (whatever backend) and then computes the distances. | |||
2020-04-12 | Parallelize the "precomputed" case of knn | Marc Glisse | |
It is supposed to be possible to compile numpy with openmp, but it looks like it isn't done in any of the usual packages. It may be possible to refactor that code so there is less redundancy. | |||
2020-04-11 | Use longer names | Marc Glisse | |
2020-04-07 | filtration value fixed | yuichi-ike | |
2020-04-06 | Remove trailing whitespace | Marc Glisse | |
2020-04-06 | bug fixed, parameter name changed | yuichi-ike | |
2020-04-06 | test_weighted_rips added | yuichi-ike | |
2020-03-31 | merged master | tlacombe | |
2020-03-31 | modified import in test to get consistent with gudhi.wasserstein.barycenter | tlacombe | |
2020-03-30 | Streamline initialize_filtration | Marc Glisse | |
2020-03-30 | Merge pull request #215 from MathieuCarriere/extended_persistence | Marc Glisse | |
Extended persistence | |||
2020-03-28 | Default param of 2 for DTM | Marc Glisse | |
2020-03-28 | Fix test | Marc Glisse | |
2020-03-28 | Fix test | Marc Glisse | |
2020-03-28 | Missing test | Marc Glisse | |
2020-03-27 | doc | Marc Glisse | |
2020-03-27 | Improve coverage | Marc Glisse | |
2020-03-26 | cmake | Marc Glisse | |
2020-03-24 | Remove min_persistence from generators | Marc Glisse | |
It is supposed to be handled in persistence() already. | |||
2020-03-23 | new fixes | MathieuCarriere | |
2020-03-23 | Add test | Marc Glisse | |