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2021-11-06Merge pull request #538 from ↵Vincent Rouvreau
VincentRouvreau/empty_diagram_management_for_representations Empty diagram management for representations
2021-11-02Merge pull request #525 from Hind-M/knn_dtm_overflowVincent Rouvreau
Warn about overflow/nan in knn
2021-10-27Add test to check outputs of the two torus implementationsHind-M
2021-10-26Add comments and some minor changes following code reviewHind-M
2021-10-25Revert "Add warnings in dtm.py for DistanceToMeasure and DTMDensity"Hind-M
This reverts commit f461f050ee8bad509814b4851ab7ae8f43502962.
2021-10-21Factorize cpp and python torus tests implementationsHind-M
2021-10-20Add simplex tree test for persistence_intervals_in_dimensionVincent Rouvreau
2021-10-20Improve tests for empty representationsVincent Rouvreau
2021-10-19Add empty diags testsVincent Rouvreau
2021-10-18First part of the fixVincent Rouvreau
2021-10-08Add warnings in dtm.py for DistanceToMeasure and DTMDensityHind-M
Add DTMDensity warning test
2021-09-22Rename function of torus cpp version and import it with sphere in pointsHind-M
Change documentation accordingly
2021-09-08Set the warning filter to "always"Hind-M
Add test for dtm overflow warning
2021-08-11Add test for sphere and torusHind-M
Fix numerical approximations inconsistencies with dim fraction exponent when generating points as grid on torus Add notes in doc regarding the torus versions use cases
2021-05-28Merge pull request #365 from tlacombe/essential_part_in_wassersteinVincent Rouvreau
Essential part in wasserstein
2021-05-25Add a separator argument that goes with the ↵Hind-M
rips_complex_diagram_persistence_from_distance_matrix_file_example input file Specify explicitly the separator when using a specific input file
2021-04-27now consider (inf,inf) as belonging to the diagonal ; more teststlacombe
2021-04-24Merge pull request #476 from mglisse/farMarc Glisse
Sparse Rips and choose_n_farthest_points, fix #456
2021-04-20update doc and teststlacombe
2021-04-17Safely drop some vertices in sparse RipsMarc Glisse
2021-04-17Sparse Rips: disable `mini`, optimize a bit redundant pointsMarc Glisse
2021-04-15Compare lists with ==Marc Glisse
numpy/core/_asarray.py:102: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray.
2021-04-12handle essential parts testtlacombe
2021-04-12removed test_wasserstein_distance_grad to be consistent with mastertlacombe
2021-04-12change name _offdiag to _finite_part in test filetlacombe
2021-04-12merge upstream/master into essential partstlacombe
2021-01-11Ignore doctest for atol doc. Rewrite unitary test for atol doc. To be ↵ROUVREAU Vincent
synchronized
2021-01-11Remove sphinx doc test for atol as points order can be inverted and add it ↵ROUVREAU Vincent
in a UT but sorted
2020-12-12Merge pull request #436 from VincentRouvreau/ci_without_cgalVincent Rouvreau
Add build and tests wo cgal and eigen and wo cgal
2020-12-11code review: throw an eception if collapse_edges when no Eigen3ROUVREAU Vincent
2020-12-11code review: GUDHI_USE_EIGEN3 generated by CMake in __init__.py as suggested ↵ROUVREAU Vincent
and roll back the other solution
2020-12-10Merge pull request #408 from mglisse/subsampleMarc Glisse
Clean-ups in subsampling
2020-12-09Fix #388ROUVREAU Vincent
2020-12-08rollback test_representation and a CGAL condition to launch itROUVREAU Vincent
2020-12-08Make representations tests work if CGAL and/or POT is not thereROUVREAU Vincent
2020-11-13Merge pull request #405 from mglisse/botnegMarc Glisse
Bottleneck distance for one point or negative coordinates
2020-11-13Test with negative coordinatesMarc Glisse
2020-11-09Don't test the equality case in sparsify_point_set. sqrt.Marc Glisse
2020-11-08Test BettiCurve with infinite valueMarc Glisse
+ black reformatting
2020-11-02Merge master and resolve conflictsROUVREAU Vincent
2020-10-16Merge pull request #396 from VincentRouvreau/tensorflow_wasserstein_testVincent Rouvreau
Added tests for wasserstein distance with tensorflow
2020-10-05code review: move test_wasserstein_distance_grad from ↵ROUVREAU Vincent
test_wasserstein_distance.py to test_wasserstein_with_tensors.py
2020-09-29Added tests for wasserstein distance with tensorflowROUVREAU Vincent
2020-08-18reset_filtration from a dimension (instead of 'until')ROUVREAU Vincent
2020-08-18Merge master and resolve conflictsROUVREAU Vincent
2020-08-18Merge master & resolve conflictsROUVREAU Vincent
2020-08-12code review: boundaries uses only once find and return a pair of iterator. ↵ROUVREAU Vincent
Exception is raised when not found. tested
2020-08-12code review: Add test to get boundaries from a vertexROUVREAU Vincent
2020-08-04Fix python alpha complex for conda packageROUVREAU Vincent
2020-07-31code review: collapse edges should copy the 0-skeleton. A test was addedROUVREAU Vincent
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