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2021-06-29Fix issue #502: check homology_coeff_field primality before computing ↵Hind-M
persistence
2021-06-25Fix #486ROUVREAU Vincent
2021-06-25update headers, conf.py for the new theme and bottleneck image to be smallerROUVREAU Vincent
2021-06-25add sphinx-paramlinks and python-docs-theme in installation guideROUVREAU Vincent
2021-06-24Use python_docs_theme. Dependency added in gudhi-deployROUVREAU Vincent
2021-06-07Replace 'uniform' flag of torus generation with 'sample' taking two possible ↵Hind-M
values: 'grid'(i.e uniform==True) or 'random' (i.e uniform==False)
2021-06-07Add a 3d sphere image to doc for datasets_generatorsHind-M
2021-06-01Add datasets generators documentationHind-M
2021-05-28Merge remote-tracking branch 'upstream/master' into generate_points_torus_pythonHind-M
2021-05-28Merge pull request #481 from Hind-M/generate_points_sphere_pythonVincent Rouvreau
Add random points generator on sphere in python, with an example
2021-05-28Merge pull request #365 from tlacombe/essential_part_in_wassersteinVincent Rouvreau
Essential part in wasserstein
2021-05-27Add documentation to python torus fonction and apply some modifications ↵Hind-M
according to PR comments
2021-05-26Change some output messages and documentation to me more explicitHind-M
2021-05-25Add a separator argument that goes with the ↵Hind-M
rips_complex_diagram_persistence_from_distance_matrix_file_example input file Specify explicitly the separator when using a specific input file
2021-05-21Fix issue #489 RipsComplex out of bounds accessHind-M
2021-05-10Rename dim to ambient_dim for sphere (to be consistent with dim in torus)Hind Montassif
2021-05-10Add __init__.py files at every module levelHind Montassif
Standardize functions to match the existing ones in sphere
2021-05-07Replace num_points with n_samples to be consistent with sphereHind Montassif
2021-05-07Use PI constant from numpy instead of mathHind Montassif
Modify grid points generation incorrect formula
2021-05-05Add __init__ files at every level in modulesHind Montassif
Remove last modules level and add sample type argument Rename num_points to n_samples
2021-05-05Merge pull request #488 from VincentRouvreau/numpy_minimal_versionVincent Rouvreau
numpy.take_along_axis used in knn requires numpy>=1.15.0
2021-05-04Set Simplex_tree_interface_full_featured constructor name (Simplex_tree) to ↵Hind Montassif
the class name
2021-04-30First version of points generation on torusHind Montassif
2021-04-29numpy.take_along_axis used in knn requires numpy>=1.15.0ROUVREAU Vincent
2021-04-28Add points (dataset type) before the underlying model (sphere) as a moduleHind
2021-04-28enhancing the doc2tlacombe
2021-04-28enhancing the doctlacombe
2021-04-27Rename and reorganize point generators moduleHind
2021-04-27Remove the commented graphic part from the example (to be added to tutorial ↵Hind
notebooks)
2021-04-27changed infty to inf in doctlacombe
2021-04-27now consider (inf,inf) as belonging to the diagonal ; more teststlacombe
2021-04-27Merge branch 'essential_part_in_wasserstein' of ↵tlacombe
https://github.com/tlacombe/gudhi-devel into essential_part_in_wasserstein merging typo correction
2021-04-27Typo - Update src/python/gudhi/wasserstein/wasserstein.pyThéo Lacombe
Co-authored-by: Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com>
2021-04-27Typo correction - Update src/python/gudhi/wasserstein/wasserstein.pyThéo Lacombe
Co-authored-by: Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com>
2021-04-27Remove make install target from python and rewrite documentation accordinglyROUVREAU Vincent
2021-04-26Replace assert with GUDHI_CHECKHind
Make the function non-template Change typing and casting
2021-04-24Merge pull request #476 from mglisse/farMarc Glisse
Sparse Rips and choose_n_farthest_points, fix #456
2021-04-23Make adjustments according to the received reviewsHind
2021-04-22Add random points generator on sphere in python, with an exampleHind
2021-04-21typo correctedtlacombe
2021-04-20update doc and teststlacombe
2021-04-19Merge pull request #472 from mglisse/colorVincent Rouvreau
Fix contradictory color
2021-04-17Safely drop some vertices in sparse RipsMarc Glisse
2021-04-17Sparse Rips: disable `mini`, optimize a bit redundant pointsMarc Glisse
2021-04-16Merge pull request #471 from Hind-M/cython_set_language_levelVincent Rouvreau
Set Cython language level in setup.py to remove warning, and fix python3 implicit relative imports disability
2021-04-15Merge pull request #474 from mglisse/cmplistMarc Glisse
Compare lists with ==
2021-04-15Name the argument n_neighbors of NearestNeighborsMarc Glisse
It seems that it has had the same name for a while, so this shouldn't break anything. sklearn/utils/validation.py:70: FutureWarning: Pass n_neighbors=3 as keyword args. From version 1.0 (renaming of 0.25) passing these as positional arguments will result in an error
2021-04-15Compare lists with ==Marc Glisse
numpy/core/_asarray.py:102: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray.
2021-04-15Fix contradictory colorMarc Glisse
2021-04-15Set Cython language level to remove warningHind
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