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2022-06-07Rephrase description for fetch functionsHind-M
2022-06-07Merge remote-tracking branch 'upstream/master' into fetch_datasetsHind-M
2022-06-07Merge pull request #590 from ↵Vincent Rouvreau
VincentRouvreau/simplex_tree_extended_persistence_enhancement extended_persistence uses directly get_persistent_pairs
2022-06-03Merge pull request #624 from albert-github/feature/bug_spellVincent Rouvreau
Spelling corrections
2022-05-25Add info in the doc concerning default data_home and 'GUDHI_DATA' env variableHind-M
2022-05-24Make get_data_home function privateHind-M
2022-05-24Specify in doc the use of cache when fetching datasets with wrapping functionsHind-M
2022-05-24Use autofunction instead of automodule in doc and add 2d spiral imageHind-M
2022-05-23Merge pull request #619 from albert-github/feature/bug_persistent_linksVincent Rouvreau
Documentation: Non persistent links
2022-05-23[skip ci] example from a small moleculeVincent Rouvreau
2022-05-22Update src/python/test/test_simplex_tree.pyalbert-github
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2022-05-22Spelling correctionsalbert-github
A number of spelling corrections as reported by the codespell (see: https://github.com/codespell-project/codespell) program and lists. Some remarks: - not considered are grammatical errors - not considered are names in the code although there are a number that could be improved (like `childs` -> `children`) - in the documentation it could be made clearer what are variables and what is running text (e.g. by placing variables in running text between backticks) - some comments are in the French language, I think it would be better to have them in the English (United States version).
2022-05-21Documentation: Non persistent linksalbert-github
During the link check we found some references to `#title..` in respect to links to CGAL, these links work at the moment but are, by CGAL, generated links during runtime based on the HTML `<H...>` tags. When a new paragraph or chapter is added these numbers will change and thus will the link point to the wrong place. All these items have also a more persistent reference anchor that is generated based on the `<name>` of the section (e.g. `\section <name> <description>`). Therefore it is better to used the references based on the `<name>`.
2022-05-20Documentation: Updating redirected linksalbert-github
Updating simple links in documentation sources for which we got during link checking: ``` This is a permanent redirect. The link should be updated. ```
2022-05-17Merge remote-tracking branch 'upstream/master' into fetch_datasetsHind-M
2022-05-17Merge remote-tracking branch 'origin/master' into collapse-pr2Marc Glisse
2022-05-16code review: use isinstance(x, T) instead of issubclass(type(x),T)Vincent Rouvreau
2022-05-16code review: limit test was not respecting the one described in the ↵Vincent Rouvreau
documentation
2022-05-10Fix limit tests for plot (and warning in test)Vincent Rouvreau
2022-05-09Merge pull request #504 from ↵Vincent Rouvreau
VincentRouvreau/persistence_graphical_tools_improvements Persistence graphical tools improvements
2022-05-06Delete bunny array before removing the fileHind-M
2022-05-05Remove default data home test (because of 'GUDHI_DATA' environment variable ↵Hind-M
option)
2022-05-05Add GUDHI_DATA environment variable optionHind-M
2022-05-04Ask for file_path as parameter of remote fetching functions instead of both ↵Hind-M
dirname and filename Modify remote fetching test
2022-05-02Merge remote-tracking branch 'upstream/master' into fetch_datasetsHind-M
2022-04-29plot_persistence_diagram and plot_persistence_barcode improvementsVincent Rouvreau
2022-04-22Merge branch 'master' into simplex_tree_extended_persistence_enhancementVincent Rouvreau
2022-04-21Make Windows compilation fails on error (#598)Vincent Rouvreau
Use '-DEIGEN_DEFAULT_DENSE_INDEX_TYPE=int' as a workaround
2022-04-11Merge pull request #596 from ↵Vincent Rouvreau
VincentRouvreau/float_relative_precision_alpha_python Float relative precision alpha python
2022-04-06code review: Rewrite warnings in case of import errorsVincent Rouvreau
2022-04-06Merge remote-tracking branch 'upstream/master' into ↵Vincent Rouvreau
persistence_graphical_tools_improvements
2022-04-05nogil for float_relative_precision methodsVincent Rouvreau
2022-03-31code review: no need to nogil for cheap functions. Repeat ↵Vincent Rouvreau
get_float_relative_precision is only for safe mode
2022-03-31Test the featureVincent Rouvreau
2022-03-30get/set float_relative_precision and its documentationVincent Rouvreau
2022-03-28doc review: add a warning about phantom simplices for blocker_funcVincent Rouvreau
2022-03-28doc review: remove segfault note as it is no more the caseVincent Rouvreau
2022-03-24Rewrite python docMarc Glisse
2022-03-21extended_persistence uses directly get_persistent_pairsVincent Rouvreau
2022-03-21Add some c++ tests and use unitary_tests_utils. Fix python testVincent Rouvreau
2022-03-09Add bunny image to the datasets docHind-M
2022-03-08Merge master and resolve commitsVincent Rouvreau
2022-03-02Remove file when given checksum does not matchHind-M
Add more details to doc Remove default dirname value in _fetch_remote Add points/ subfolder in fetching functions
2022-03-02Purge GUDHI_USE_EIGEN3Marc Glisse
2022-03-02Modifications following PR reviewHind-M
2022-03-01Merge pull request #582 from VincentRouvreau/stree_copy_pythonVincent Rouvreau
Add SimplexTree copy method and its test
2022-02-28code review: copy simplex tree c++ pointer in a factorized nogil functionVincent Rouvreau
2022-02-28doc review: reformulate the copy notesVincent Rouvreau
2022-02-28code review: use 'isinstance' instead of 'type'Vincent Rouvreau
2022-02-22Remove mention of eigenMarc Glisse
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