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2022-01-04Merge pull request #556 from Hind-M/python_tests_debugVincent Rouvreau
Fix failing tests in debug mode
2021-12-17Use vs 2019 for appveyor as well as python 3.9 (#534)Vincent Rouvreau
* Visual studio 2019 (instead of 2017) * Let vcpkg install cgal manage its dependencies (boost, mpfr and gmp) * vcpkg install tbb also * need to vcpkg integrate install * pip installations are no more in --user mode * Modify all / to \ for windows pths * Compile python module --inplace, and copy required dll inside gudhi directory (add dll path to windows PATH is not enough) * Cmake add_GUDHI_PYTHON_lib_dir was not multi-path proof (happens in windows with release_path;debug_path mechanism) * With CGAL >= 5.3.0, CGAL_HEADER_ONLY CMake variable is no more set as it is the default mode * GUDHI_PYTHON_PATH_ENV Cmake variable requires ; as path separator on windows, and : otherwise
2021-12-15Fix failing tests in debug modeHind-M
2021-12-07Merge pull request #544 from Hind-M/torus_warningsVincent Rouvreau
Remove sphinx warnings for torus
2021-12-03Indent properly the docstringHind-M
Remove redundant return type
2021-11-15Remove irrelevant q in test_dtm_overflow_warningsHind-M
2021-11-15Keep dtm warnings test for "hnsw"Hind-M
2021-11-15Disable test of dtm warnings until next version of pykeops is released (cf. ↵Hind-M
issue #543)
2021-11-09Remove sphinx warnings for torusHind-M
2021-11-06Merge pull request #538 from ↵Vincent Rouvreau
VincentRouvreau/empty_diagram_management_for_representations Empty diagram management for representations
2021-11-05code review: try/except in function and assert on length of diagrams for ↵Vincent Rouvreau
error menagement
2021-11-05code review: factorize sample range computationVincent Rouvreau
2021-11-04code review: use len instead of .shape[0]Vincent Rouvreau
2021-11-04code review: try-except inside the ifVincent Rouvreau
2021-11-03Merge pull request #529 from ↵Vincent Rouvreau
VincentRouvreau/moderate_alpha_complex_make_filtration_non_decreasing make_filtration_non_decreasing no more always called
2021-11-03Merge pull request #541 from VincentRouvreau/no_more_inria_gforgeVincent Rouvreau
No more gforge references
2021-11-02No more gforge referencesVincent Rouvreau
2021-11-02Merge pull request #525 from Hind-M/knn_dtm_overflowVincent Rouvreau
Warn about overflow/nan in knn
2021-11-02Merge pull request #490 from Hind-M/generate_points_torus_pythonVincent Rouvreau
First version of points generation on torus
2021-11-02Apply MG's suggestionVincent Rouvreau
2021-11-02Precise the torus is flatVincent Rouvreau
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2021-10-27Add test to check outputs of the two torus implementationsHind-M
2021-10-27Replace itertools in grid torus generation function with something faster in ↵Hind-M
most general use cases
2021-10-26Add comments and some minor changes following code reviewHind-M
2021-10-25Merge branch 'knn_dtm_overflow' of https://github.com/Hind-M/gudhi-devel ↵Hind-M
into knn_dtm_overflow
2021-10-25Revert "Add warnings in dtm.py for DistanceToMeasure and DTMDensity"Hind-M
This reverts commit f461f050ee8bad509814b4851ab7ae8f43502962.
2021-10-25Revert "Add torch dependency for some python tests"Hind-M
This reverts commit 44659b4d5c2df18745e36280317ecbc9c6a5b411.
2021-10-22Fix exception management when sklearn version < 1.0Vincent Rouvreau
2021-10-21Factorize cpp and python torus tests implementationsHind-M
2021-10-20Make Entropy work and also fix a bug in the loopVincent Rouvreau
2021-10-20Add simplex tree test for persistence_intervals_in_dimensionVincent Rouvreau
2021-10-20Improve tests for empty representationsVincent Rouvreau
2021-10-19Add empty diags testsVincent Rouvreau
2021-10-18First part of the fixVincent Rouvreau
2021-10-08Merge branch 'master' into knn_dtm_overflowHind-M
2021-10-08Add torch dependency for some python testsHind-M
2021-10-08Add warnings in dtm.py for DistanceToMeasure and DTMDensityHind-M
Add DTMDensity warning test
2021-10-07Move warnings import to the beginning of knn.py fileHind-M
Use isfinite instead of isinf and isnan Use catch_warnings context manager instead of "always" with simplefilter
2021-09-22Rename function of torus cpp version and import it with sphere in pointsHind-M
Change documentation accordingly
2021-09-22Replace the doc sphere image plotted with trisurf with another using ↵Hind-M
scattered points
2021-09-13make_filtration_non_decreasing no more called in alpha complex dD exact ↵VincentRouvreau
version and exact and safe 3d versions
2021-09-08Set the warning filter to "always"Hind-M
Add test for dtm overflow warning
2021-09-07Merge pull request #527 from VincentRouvreau/fix_documentation_broken_linksVincent Rouvreau
Fix broken links. Add a tool to generate cpp example page
2021-08-31Fix broken links. Add a tool to generate cpp example pageROUVREAU Vincent
2021-08-30Fix dtm and knn failing testsHind-M
2021-08-27Fix issue #314Hind-M
Add overflow and nan warnings in knn when using torch and hnswlib
2021-08-26Fix #416ROUVREAU Vincent
2021-08-26Pybind11 is mandatory for python module (as explained in the doc and as it ↵ROUVREAU Vincent
is imported by setup.py)
2021-08-26Deploy pyproject.tomlROUVREAU Vincent
2021-08-26Add all build dependencies (to be buildable in a virtual env - even if cmake ↵ROUVREAU Vincent
already detects it)
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