Age | Commit message (Collapse) | Author | |
---|---|---|---|
2020-05-07 | doc | Marc Glisse | |
2020-05-06 | Reimplement the bottleneck python wrapper with pybind11 | Marc Glisse | |
2020-05-06 | Refactor the numpy -> C++ range conversion | Marc Glisse | |
If we want to reuse it for bottleneck... | |||
2020-05-06 | Avoid reading outside of allocated region | Marc Glisse | |
The result was unused, but better be safe. | |||
2020-05-03 | Fewer copies and no GIL for hera | Marc Glisse | |
Now the input arrays are not copied as long as they use a float64 data type, even if they are not contiguous. That's not important here, but I wanted an example of how to do it. More importantly, no need to hold the GIL. I was too lazy to benchmark to see if that changed anything... | |||
2020-05-03 | Fix TBB Warning: tbb/task_scheduler_init.h is deprecated. | ROUVREAU Vincent | |
2020-04-30 | Merge pull request #285 from mglisse/wass-autodiff | Marc Glisse | |
Automatic differentiation for Wasserstein distance | |||
2020-04-30 | Merge pull request #297 from mglisse/size_t_size | Marc Glisse | |
Make size() return size_t | |||
2020-04-29 | Make size() return size_t | Marc Glisse | |
It probably returns the biggest integer used in the whole module, it doesn't make sense that it uses a smaller type. | |||
2020-04-29 | Merge remote-tracking branch 'origin/master' into gen2 | Marc Glisse | |
2020-04-25 | Merge pull request #292 from VincentRouvreau/one_biblio_for_all_sphinx | Vincent Rouvreau | |
Fix bibliography for sphinx | |||
2020-04-24 | Code review: plain instead of unsrt for biblio - concatenate biblio files - ↵ | ROUVREAU Vincent | |
undo cgal citation removal | |||
2020-04-24 | Fix bibliography for sphinx | ROUVREAU Vincent | |
2020-04-23 | Merge remote-tracking branch 'origin/master' into compute_persistence | Marc Glisse | |
2020-04-23 | Fix pasto in the doc | Marc Glisse | |
2020-04-22 | Reduce the probability of failure of test_dtm | Marc Glisse | |
It is expected that hnsw sometimes misses one neighbor, which has an impact on the DTM, especially if the number of neighbors considered is low. | |||
2020-04-22 | Document incompatibility of matching=True and enable_autodiff | Marc Glisse | |
2020-04-22 | Merge remote-tracking branch 'origin/master' into wass-autodiff | Marc Glisse | |
2020-04-22 | Clarify the doc of enable_autodiff | Marc Glisse | |
2020-04-22 | Test value of computed gradient | Marc Glisse | |
2020-04-22 | Rename local variables | Marc Glisse | |
2020-04-22 | Document several optional dependencies of knn | Marc Glisse | |
2020-04-20 | Fix #279 | ROUVREAU Vincent | |
2020-04-20 | Drop one comment | Marc Glisse | |
2020-04-20 | Check that dependencies are present before testing | Marc Glisse | |
2020-04-20 | Merge remote-tracking branch 'origin/master' into wass-autodiff | Marc Glisse | |
2020-04-20 | Merge pull request #265 from mglisse/dtm | Marc Glisse | |
DTM | |||
2020-04-20 | Explicitly pass sort_results=True on some tests | Marc Glisse | |
2020-04-20 | Reintroduce _proj_on_diag, with a unit test | Marc Glisse | |
2020-04-20 | Add __license__ | Marc Glisse | |
2020-04-19 | Test comparison with persistence_pairs() | Marc Glisse | |
2020-04-19 | Drop redundant test | Marc Glisse | |
torch.isnan(None) raises an exception anyway | |||
2020-04-19 | Test gradient | Marc Glisse | |
2020-04-19 | Unwrap the result | Marc Glisse | |
2020-04-18 | enable_autodiff for POT wasserstein_distance | Marc Glisse | |
2020-04-17 | Simplify distance-to-diagonal in Wasserstein | Marc Glisse | |
2020-04-17 | Merge remote-tracking branch 'origin/master' into filtration | Marc Glisse | |
2020-04-16 | Merge pull request #260 from VincentRouvreau/alpha_complex_improvement | Vincent Rouvreau | |
merge https://github.com/mglisse/gudhi-devel/tree/alpha-cache | |||
2020-04-16 | Fix doc of Simplex_tree about keys | Marc Glisse | |
2020-04-16 | Update the concept of the simplicial complex | Marc Glisse | |
We use the key now. It wouldn't be hard to use an unordered_map, but since we usually have an unused field key... | |||
2020-04-14 | Check that the gradient is not NaN | Marc Glisse | |
This can easily happen with pytorch, and there is special code to avoid it. | |||
2020-04-14 | Merge remote-tracking branch 'origin/master' into dtm | Marc Glisse | |
2020-04-14 | Doc improvements | Marc Glisse | |
2020-04-14 | EagerPy in cmake | Marc Glisse | |
2020-04-14 | More testing | Marc Glisse | |
2020-04-13 | Tweak to detect fit_transform | Marc Glisse | |
2020-04-13 | Remove left-over code | Marc Glisse | |
eagerpy is only used with enable_autodiff | |||
2020-04-13 | Generalize enable_autodiff to more implementations | Marc Glisse | |
Still limited to L^p | |||
2020-04-13 | Fix NaN gradient with pytorch | Marc Glisse | |
2020-04-13 | Small autodiff tweaks | Marc Glisse | |