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2021-10-25Revert "Add torch dependency for some python tests"Hind-M
This reverts commit 44659b4d5c2df18745e36280317ecbc9c6a5b411.
2021-10-08Add torch dependency for some python testsHind-M
2021-10-08Add warnings in dtm.py for DistanceToMeasure and DTMDensityHind-M
Add DTMDensity warning test
2021-10-07Move warnings import to the beginning of knn.py fileHind-M
Use isfinite instead of isinf and isnan Use catch_warnings context manager instead of "always" with simplefilter
2021-09-08Set the warning filter to "always"Hind-M
Add test for dtm overflow warning
2021-08-30Fix dtm and knn failing testsHind-M
2021-08-27Fix issue #314Hind-M
Add overflow and nan warnings in knn when using torch and hnswlib
2021-08-12Merge pull request #506 from VincentRouvreau/test_another_sphinx_themesVincent Rouvreau
Test another sphinx themes
2021-08-12Merge pull request #518 from VincentRouvreau/mailing_lists_migrationVincent Rouvreau
mailing lists migration and rephrase contributions in installation guides
2021-08-12Merge pull request #514 from GUDHI/mglisse-patch-2Vincent Rouvreau
Avoid v[0] for persistence of empty complex
2021-08-12Merge pull request #509 from Hind-M/homology_coeff_fieldVincent Rouvreau
Fix issue #502: check homology_coeff_field primality before computing persistence
2021-08-05mailing lists migration and rephrase contributions in installation guidesROUVREAU Vincent
2021-07-27Remove unnecessary checks for primalityHind-M
Document homology_coeff_field values in cubical
2021-07-24Avoid v[0] for persistence of empty complexMarc Glisse
It was reported by some debug mode while I was working on something else
2021-07-23Remove bad attribute maybe_unusedMarc Glisse
`CGAL_UNUSED` or `[[maybe_unused]]` is useful if we name the argument but don't use it. If we don't name it, the attribute is wrong as it would apply to the type and not the variable.
2021-07-12Limit homology_coeff_field value to max allowedHind-M
Add test with first prime outside the allowed range
2021-07-01Move primality test to Field_Zp::initHind-M
Throw exception when not prime Add tests
2021-06-29Fix issue #502: check homology_coeff_field primality before computing ↵Hind-M
persistence
2021-06-25Fix #486ROUVREAU Vincent
2021-06-25update headers, conf.py for the new theme and bottleneck image to be smallerROUVREAU Vincent
2021-06-25add sphinx-paramlinks and python-docs-theme in installation guideROUVREAU Vincent
2021-06-24Use python_docs_theme. Dependency added in gudhi-deployROUVREAU Vincent
2021-05-28Merge pull request #481 from Hind-M/generate_points_sphere_pythonVincent Rouvreau
Add random points generator on sphere in python, with an example
2021-05-28Merge pull request #365 from tlacombe/essential_part_in_wassersteinVincent Rouvreau
Essential part in wasserstein
2021-05-26Change some output messages and documentation to me more explicitHind-M
2021-05-25Add a separator argument that goes with the ↵Hind-M
rips_complex_diagram_persistence_from_distance_matrix_file_example input file Specify explicitly the separator when using a specific input file
2021-05-21Fix issue #489 RipsComplex out of bounds accessHind-M
2021-05-10Rename dim to ambient_dim for sphere (to be consistent with dim in torus)Hind Montassif
2021-05-05Add __init__ files at every level in modulesHind Montassif
Remove last modules level and add sample type argument Rename num_points to n_samples
2021-05-05Merge pull request #488 from VincentRouvreau/numpy_minimal_versionVincent Rouvreau
numpy.take_along_axis used in knn requires numpy>=1.15.0
2021-05-04Set Simplex_tree_interface_full_featured constructor name (Simplex_tree) to ↵Hind Montassif
the class name
2021-05-03Merge pull request #484 from VincentRouvreau/doxygen_improvementVincent Rouvreau
Doxygen documentation improvement
2021-04-29numpy.take_along_axis used in knn requires numpy>=1.15.0ROUVREAU Vincent
2021-04-28Add points (dataset type) before the underlying model (sphere) as a moduleHind
2021-04-28enhancing the doc2tlacombe
2021-04-28enhancing the doctlacombe
2021-04-28update DoxyfileROUVREAU Vincent
2021-04-27Rename and reorganize point generators moduleHind
2021-04-27Doxygen documentation improvementROUVREAU Vincent
2021-04-27Remove the commented graphic part from the example (to be added to tutorial ↵Hind
notebooks)
2021-04-27changed infty to inf in doctlacombe
2021-04-27now consider (inf,inf) as belonging to the diagonal ; more teststlacombe
2021-04-27Merge branch 'essential_part_in_wasserstein' of ↵tlacombe
https://github.com/tlacombe/gudhi-devel into essential_part_in_wasserstein merging typo correction
2021-04-27Typo - Update src/python/gudhi/wasserstein/wasserstein.pyThéo Lacombe
Co-authored-by: Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com>
2021-04-27Typo correction - Update src/python/gudhi/wasserstein/wasserstein.pyThéo Lacombe
Co-authored-by: Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com>
2021-04-27Remove make install target from python and rewrite documentation accordinglyROUVREAU Vincent
2021-04-26Replace assert with GUDHI_CHECKHind
Make the function non-template Change typing and casting
2021-04-26Merge pull request #480 from Hind-M/replace_hardcoded_piVincent Rouvreau
Replace hardcoded PI with M_PI from cmath
2021-04-24Merge pull request #476 from mglisse/farMarc Glisse
Sparse Rips and choose_n_farthest_points, fix #456
2021-04-23Use double_constants instead of templated constantsHind
Use the boost double_constants namespace in each function that needs two_pi
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