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2017-04-12a few more correction. First of all, bottleneck distance is added (although ↵pdlotko
there is something strange in the results, FG has been pinged about this). Second of all, all the programs in utylites should now read general files (and dimension of persistence to be read is one of the parameteds of files). This still need to be tested and will be tested soon. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2339 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e60d14f07db223646597230d7f0bd78dd090bc0b
2017-04-09Merging two functions set_up_values_of_landscapes in persistence landscapes ↵pdlotko
on a grid into one. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2322 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c44a3b5adb393900d5dc6e76faff0a2c6f0bca0e
2017-04-09Answer to Marc's comments. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2321 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4eb08a7ca5664fffd8e683c30871d3fd53d1a551
2017-04-08Answer to Marc's comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2320 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 564683f4a60572ac78f9c45c4cc589d97e7663ed
2017-04-07Answers to Marc's comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2319 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 51b36668541a99c43ad801a9449d7208135f83b7
2017-04-07Adding a new reading method for persistence diagrams.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2318 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dd4dcc3da249ae938674d3bd4db537ac982368c0
2017-04-07Answers to Marc's commentspdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2317 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f941a6b20210282408d0ef95b84daa973add2513
2017-04-06Answer to MG4 comments. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2314 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e59312ce2c58d4ac19f2e9d46b7ca4dd29ed8e6e
2017-04-06Answering MG3 comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2313 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3bae7a55d05831af55a5b1c3e0d2695383af325f
2017-04-01Merge last trunk modifications and fix new rips interfacevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2299 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e836cba1a372f609e94b66b6db512817a3d875e
2017-03-31Answer to Vincent's email.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2295 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 81231c61a677939c03552b26ae065dfff970b759
2017-03-31solved problem with cmake.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2294 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34fc791c80d9e66ab18e992f73bbf3252b3d5e1e
2017-03-29Version ready to be merge with bottleneck distancepdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2281 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d47c6fe44885688b65a33481a1c27817a73d1b4a
2017-03-28Missing a testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 30330428b0071967367d1708338de0c7d40d8a67
2017-03-28Missing a test for cythonvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2272 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 223961ca5575e07d0db2c93ee0326864166980d8
2017-03-28deleting concretization folder. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2271 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c4330166bd9f70b2b39c4494728c85f972e3363c
2017-03-28Before merging with a trunk.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2269 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4546accaf19b1d8d9c49d53ece4000b01ee4e811
2017-03-28Make Python interface compile, test and doc for Python2 and Python3vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2267 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f7397ecc5aba27ad4ecc794f4fbf5ca857847113
2017-03-28Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2263 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b430e79ecc94bee975d748eb3e2106c7dbab3ce
2017-03-27Adding answers to Marc's comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2258 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4ad10b1ec977bb1fcfdab43c4d9ee9ed6ef120f5
2017-03-27cleanibng up the folder.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2257 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: be1967f952bad55cc24afc42f325df726d931594
2017-03-27adding persistence_representations subfolder (at the moment with all the junk).pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2256 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fdf52ca688d992655ff139f42e316d5b7b3f8a12
2017-03-24Merge cgal_4.8_issue branch into the trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2242 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 094b70b4141e7456651263b1619240aff6a5d562
2017-03-24Workaround for CGAL version 4.8 compilation issuevrouvrea
New target CGAL_WITH_EIGEN3_VERSION set with CGAL_VERSION when CGAL and Eigen3 found to ease CMakeLists.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2241 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2fbf1f9397aa1549ba05aa26ac6852b882dce147
2017-03-24Answer to Marc's comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2240 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20c02d536373553322a3e10eb4aacc2959db654a
2017-03-24Factorize third party management and extract them from CMakeLists.txtvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2239 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ed246b649418a623919b8b337ce366f5cc1d27f
2017-03-24cpplint fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2238 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 79b012972d91ce734cb3b11300ecf2e97eb2ea66
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2237 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e320827b0f22160d6645f9ac89d7d7790964cf00
2017-03-24cpplint fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2236 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d3680e5085b858b2d5930179ca345f708688cbae
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2233 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e82750380435d5f3e2972a65c5322ce268e4b559
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2232 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ac02d5dd3b2aedd4795f775c228fe5ef7e1b3320
2017-03-24Merge rollback of bad warning fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2231 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6911213e51f96f4ae2319e8bec9b15140ba707ef
2017-03-24Fix cpplint on cython interfacesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2229 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 41a958b1be51ac938b45b384cde7940a85e9dea0
2017-03-23Rollback modifvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bad_warning_removal_rollback@2227 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5bd3fda973c28dfb5567abbd9cf23d9d4dc653b5
2017-03-23Merge ST_cythonize branch into the trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2225 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 013d700aaa4b255cc91ff79020b40b7e6c4e7d05
2017-03-22Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2224 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 822ae367f4384a181f96498dfb4f354c433337ca
2017-03-22GudhUI CMakeLists.txt modifications. It is main CMakeLists.txt to find CGAL.vrouvrea
Was not compiling with CGAL 4.3 for instance. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2223 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 22b363c81cd69a296e1fc362eab0f5e5d171e402
2017-03-22make th same example as in C++vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2222 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c18c9aaeaab7005a7dc1471f7bff6acc94dad8d8
2017-03-22rename get_star functionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2221 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fff57c25d175a6aed355efeb449f94a1af2249b3
2017-03-22Rename plot_persistence_diagram and barcodevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2220 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 66a06ffdc62d5284119df80c3f104a48568cd241
2017-03-22Interface insert_simplex and insert_simplex_and_subfaces in SimplexTreevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2217 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e426a8cbcba192a50b05b5cc7fa4a0fd50d8c9b
2017-03-21Roll back bad modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2216 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 832a1770a18476c18e7ba75754c5ee89225eaf34
2017-03-21expansion method and its associated testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2215 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32ad429f301b35c064eadef36dbe4e7f64f6490e
2017-03-21Memory leaksvrouvrea
Landmarks initialization were not correct git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2213 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ab7e0adb6f36b2ccfd52a8c652c1ea35258a7aa1
2017-03-21Precise when to use set_dimension functionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2212 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9e17d1b5e8a96fffe48e1b1e7b6d766d2abf33e0
2017-03-21Rename get_star_tree with get_starsvrouvrea
Rename Complex_tree typedef with Complex Typo in Rips doc for csv files for distance matrices git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2211 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a6be0ce66ef3c2c71ad43b328cebd673862a76d2
2017-03-20rename get_coface_tree with get_cofacesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2210 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c88576269982d87dd2dfd4003811628fee58dc2e
2017-03-20rename persistence function intervals_in_dim with ↵vrouvrea
persistence_intervals_in_dimension git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2209 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7991f11d249a2051d0cb6e7f453b1d6b7bcb7c36
2017-03-20using Base instead of full template class namevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2207 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3471adcb19df0859b5d905f5c5ba7e6e11ba2613
2017-03-20Rename barcode_persistence and diagram_persistence functionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2204 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f91e283fa6b6b02198ae28a44f41bd761c1c1f48
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