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2022-06-20code review: rename homology_dimensions argument. Use and document numpy ↵Vincent Rouvreau
reshape instead of cubical dimension argument
2022-06-20Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-06-20Merge pull request #643 from VincentRouvreau/alpha_extra_pointVincent Rouvreau
[Alpha] Get extra point using boundary_opposite_vertex_simplex_range
2022-06-17doc review: tuple instead of pair - index is 'm' and not 'n'Vincent Rouvreau
2022-06-17Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-06-17Merge masterVincent Rouvreau
2022-06-16Add exact option for exact cech variantHind-M
2022-06-16Merge pull request #498 from Hind-M/fetch_datasetsVincent Rouvreau
Fetch datasets
2022-06-15Fix warning and debug tracesVincent Rouvreau
2022-06-15Use boundary_opposite_vertex_simplex_range instead of boundary_simplex_range ↵Vincent Rouvreau
in alpha
2022-06-15doc review: no need 'for this'Vincent Rouvreau
2022-06-14Use boundary_opposite_vertex_simplex_range instead of boundary_simplex_range ↵Hind-M
in cech
2022-06-13Also apply the feature for user version alsoVincent Rouvreau
2022-06-13Warns no more on standard output but in a fileVincent Rouvreau
2022-06-13Move new option in the correct file. Disable every option when only build ↵Vincent Rouvreau
cpp documentation
2022-06-13Merge remote-tracking branch 'albert/feature/bug__documentation_only' into ↵Vincent Rouvreau
doxygen_only
2022-06-09removed default field coefficientMathieuCarriere
2022-06-09Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-06-09Merge remote-tracking branch 'upstream/master' into cech_optimizationHind-M
2022-06-08issue #613 [cpp documentation] Footer needs to be generated with a more ↵albert-github
recent version of doxygen With the doxygen versions <= 1.9.2 the default setting 'overflow: hidden;' causes problems. With the commit: ``` Commit: 590198b416cd53313d150428d2f912586065ea0d [590198b] Date: Wednesday, December 1, 2021 1:37:26 PM issue #8924 Horizontal scroll bar missing in HTML for wide class="dotgraph" objects ``` for the doxygen 1.9.3 version this has already been corrected but to run properly with the <= 1.9.2 version this setting is required
2022-06-08Merge pull request #632 from albert-github/feature/bug_class_diagramsVincent Rouvreau
Documentation: Obsolete CLASS_DIAGRAMS
2022-06-08Merge pull request #633 from albert-github/feature/bug_copy_doxyfile_inVincent Rouvreau
No need to copy Doxyfile.in
2022-06-08Merge branch 'master' into feature/bug_class_diagramsVincent Rouvreau
2022-06-08Merge pull request #616 from VincentRouvreau/doxygen_unbalanced_groupingsVincent Rouvreau
Fix unbalanced groups and some doxygen typos
2022-06-07DiagramScaler removed from EntropyManu
2022-06-07Rephrase description for fetch functionsHind-M
2022-06-07Merge remote-tracking branch 'upstream/master' into fetch_datasetsHind-M
2022-06-07Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-06-07Merge pull request #590 from ↵Vincent Rouvreau
VincentRouvreau/simplex_tree_extended_persistence_enhancement extended_persistence uses directly get_persistent_pairs
2022-06-07fix doc + added homology field coeffMathieuCarriere
2022-06-04Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-06-03Merge pull request #624 from albert-github/feature/bug_spellVincent Rouvreau
Spelling corrections
2022-06-01fix docMathieuCarriere
2022-05-26issue #613 [cpp documentation] Footer needs to be generated with a more ↵albert-github
recent version of doxygen The problem was that the update of the treeview was not called in the footer, though after correcting this some new problems occurred in respect to the treeview (the small pointers ran into the text) and with the in page table of cvontents (e.g. in installation.html). - footer.html: call proper update function by means of `<div>`, as base the 1.9.4 version served but also older version work. - stylesheet.css, Doxyfile.in: implemented as extra stylesheet and for the "small pointer" problem adjusted the `.arrow` settings - header.html: - placed the `<link rel="stylesheet" type="text/css" href="https://gudhi.inria.fr/assets/css/styles_feeling_responsive.css" />` more as an extra stylesheet as otherwise a second scrollbar would occur - placed the `div id="top">` at the right place - corrected `<img>` tag so it is properly closed (so XML compliant) - corrected setting of `data-topbar` to `data-topbar=true` as HTML5 does not allow attributes without values.
2022-05-25Add info in the doc concerning default data_home and 'GUDHI_DATA' env variableHind-M
2022-05-24Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into diffMathieuCarriere
2022-05-24Merge pull request #630 from albert-github/feature/bug_mathjax_3Vincent Rouvreau
Documentation: Render formulas by means of MathJax 3
2022-05-24Update src/cmake/modules/GUDHI_doxygen_target.cmakealbert-github
Co-authored-by: Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com>
2022-05-24Merge remote-tracking branch 'upstream/master' into cech_optimizationHind-M
2022-05-24Make get_data_home function privateHind-M
2022-05-24Merge pull request #623 from albert-github/feature/bug_gudhi_exampleVincent Rouvreau
Documentation: handling references to examples in a more transparent way
2022-05-24No need to copy Doxyfile.inalbert-github
In my opinion there is no need to copy the `Doxyfile.in` file to the build directory (neither in the User nor the development version). The usage is: ``` configure_file(${GUDHI_DOXYGEN_SOURCE_PREFIX}/Doxyfile.in "${CMAKE_CURRENT_BINARY_DIR}/Doxyfile" @ONLY) ``` in the file `src/cmake/modules/GUDHI_doxygen_target.cmake` and we see that this uses the file from its original source directory.
2022-05-24Specify in doc the use of cache when fetching datasets with wrapping functionsHind-M
2022-05-24Use autofunction instead of automodule in doc and add 2d spiral imageHind-M
2022-05-24Documentation: Obsolete CLASS_DIARAMSalbert-github
Since doxygen version 1.9.3 the settings `CLASS_DIAGRAMS` and `CLASS_GRAPH` have been integrated into `CLASS_GRAPH` and `CLASS_DIAGRAMS` is now obsolete. The value of `CLASS+GRAPH` doesn't have to be adjusted, in this case, as it was already set to `NO`.
2022-05-24Documentation: Render formuals by means of MathJax 3albert-github
Oops left test version in it.
2022-05-24Documentation: Render formulas by means of MathJax 3albert-github
Based on review, made a switch between MathJax 2 and MathJax 3 based on the doxygen version
2022-05-23Documentation: Render formuals by means of MathJax 3albert-github
- create entries in Doxyfile.in for the use of MathJax - adjust formula so it is properly rendered in MathJax 3 (formula will also work with MathJax 2) (available in doxygen since doxygen 1.9.2)
2022-05-23Documentation: handling references to examples in a more transparent wayalbert-github
Adding the other examples also with `gudhi_example_link`.
2022-05-23Merge masterVincent Rouvreau
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